Sequence
atgc intronic sequence ATGC exonic sequence...atgaattttctcccaatccatagctgagtcactttgtatttcctgctctagtgagagccttatatgtgaaactcaattcgttaattctcctttgtttcagGGTTTCAGAAAAATTGATACAGATCACTGGGAATTTGCAAATGAAGGATTCATCAGAGGTCAAAAGCATTTATTAAAGAATATCCGTCGAAGGAAACAAC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0011g05970.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA08G05220.2 (Glycine max), 3'ss of exon 1
atgaattttctcccaatccatagctgagtcactttgtatttcct--gctctagtgagagccttatatgtgaaact-caattcgttaattctcctttgtttcagGGTTTCAGAAAAATTGATACAGATCACTGGGAATTTGCAAATGAAGGATTCATCAGAGGTCAAAAGCATTTATTAAAGAATATCCGTCGAAGGAAACAAC
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---gtgcctctatctttttatttctttgtatttgtgtcattcctcaaggttgaggtgagtctttttttcaaagtgactaattggtaactgtaaaatctaacagGGTTTCAGGAAAATTGATACGGATTGCTGGGAATTTGCCAATGAGAACTTTGTTAGAGGTCAAAAGCATTTGTTGAAGAATATACGTAGAAGGAAACATC
upper sequence: Vv01s0011g05970.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA05G34450.2 (Glycine max), 3'ss of exon 1
atgaattttctcccaatccatagctgagtcactttgtatttcctgct----ctagtgagagccttatatgtgaaactcaattcgttaattctcctttgtttcagGGTTTCAGAAAAATTGATACAGATCACTGGGAATTTGCAAATGAAGGATTCATCAGAGGTCAAAAGCATTTATTAAAGAATATCCGTCGAAGGAAACAAC
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----gttgcctctatatgtttctttctttatatttgtgtcatttgtcgaggttgagaggagtcttttttcaaagtgactaattggtaactgtaaaatctatcagGGTTTCAGGAAAATTGATACGGATTCCTGGGAATTTGCCAATGAAAACTTTGTTAGGGGTCAAAAGCATTTGTTGAAGAATATACATAGAAGGAAACATC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctctagtgagagccttatatgtgaaactcaattcgttaattctcctttgtttcagGGTTTCAGAAAAATTGATACAGATCACTGGGAATTTGCAAATGAAGGATTCATCAGAGGTCAAAAGCATTTATTAAAGAATATCCGTCGAAGGAAACAAC
cgttaat putative branch site (score: 4)
ttctcctttgtttc CT-rich tract
ttatatgt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atgaattttctcccaatccatagctgagtcactttgtatttcctgctctagtgagagccttatatgtgaaactcaattcgttaattctcctttgtttcagGGTTTCAGAAAAATTGATACAGATCACTGGGAATTTGCAAATGAAGGATTCATCAGAGGTCAAAAGCATTTATTAAAGAATATCCGTCGAAGGAAACAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - -ttctccc
- - - - - - - - - catagct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaactca