Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161709036|gb|FC060956.1|FC060956EST: CAGAAATCAGTTGGTGGCATTGATTTGGCCTCCCCAGATTCAGTTTCAAG TGACAATAGTATTCCAAATGCAATATCTCGCCCCAAACCCATGATTTATCA
genomic: CAGAAATCAGTTGGTGGCATTGATTTGGCCTCCCCAGATTCAGTTTCAAGgtacccttta ... atttttacagTGACAATAGTATTCCAAATGCAATATCTCGCCCCAAACCCATGATTTATCA
EST:
gi|71861277|gb|DT010332.1|DT010332EST: CAGAAATCAGTTGGTGGCATTGATTTGGCCTCCCCAGATTCAGTTTCAAG TGACAATAGTATTCCAAATGCAATATCTCGCCCCAAACCCATGATTTATCA
genomic: CAGAAATCAGTTGGTGGCATTGATTTGGCCTCCCCAGATTCAGTTTCAAGgtacccttta ... atttttacagTGACAATAGTATTCCAAATGCAATATCTCGCCCCAAACCCATGATTTATCA
EST:
gi|161720734|gb|FC069959.1|FC069959EST: CAGAAATCAGTTGGTGGCATTGATTTGGCCTCCCCAGATTCAGTTTCAAG TGACAATAGTATTCCAAATGCAATATCTCGCCCCAAACCCATGATTTATCA
genomic: CAGAAATCAGTTGGTGGCATTGATTTGGCCTCCCCAGATTCAGTTTCAAGgtacccttta ... atttttacagTGACAATAGTATTCCAAATGCAATATCTCGCCCCAAACCCATGATTTATCA
EST:
gi|37185723|gb|CF605076.1|CF605076EST: CAGAAATCAGTTGGTGGCATTGATTTGGCCTCCCCAGATTCAGTTTCAAG TGACAATAGTATTCCAAATGCAATATCTCGCCCCAAACCCATGATTTATCA
genomic: CAGAAATCAGTTGGTGGCATTGATTTGGCCTCCCCAGATTCAGTTTCAAGgtacccttta ... atttttacagTGACAATAGTATTCCAAATGCAATATCTCGCCCCAAACCCATGATTTATCA
EST:
gi|110698531|gb|EE076133.1|EE076133EST: CAGAAATCAGTTGGTGGCATTGATTTGGCCTCCCCAGATTCAGTTTCAAG TGACAATAGTATTCCAAATGCAATATCTCGCCCCAAACCCATGATTTATCA
genomic: CAGAAATCAGTTGGTGGCATTGATTTGGCCTCCCCAGATTCAGTTTCAAGgtacccttta ... atttttacagTGACAATAGTATTCCAAATGCAATATCTCGCCCCAAACCCATGATTTATCA
EST:
gi|110358816|gb|EC923305.1|EC923305EST: CAGAAATCAGTTGGTGGCATTGATTTGGCCTCCCCAGATTCAGTTTCAAG TGACAATAGTATTCCAAATGCAATATC
genomic: CAGAAATCAGTTGGTGGCATTGATTTGGCCTCCCCAGATTCAGTTTCAAGgtacccttta ... atttttacagTGACAATAGTATTCCAAATGCAATATC
EST:
gi|161716750|gb|FC067846.1|FC067846EST: CAGAAATCAGTTGGTGGCATTGATTTGGCCTCCCCAGATTCAGTTTCAAG TGACAATAGTATTCCAAATGCAATATCTCGCCCCAAACCCATGATTTATCA
genomic: CAGAAATCAGTTGGTGGCATTGATTTGGCCTCCCCAGATTCAGTTTCAAGgtacccttta ... atttttacagTGACAATAGTATTCCAAATGCAATATCTCGCCCCAAACCCATGATTTATCA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tggattagggataaaattctgaattcagttcctgttgttgtgttaatttttacagTGACAATAGTATTCCAAATGCAATATCTCGCCCCAAACCCATGATTTATCAAGAACCAGTCATTCAAATTCCTTCTGGAACCAATAGGGTTTCTTCTAAC
tgttaat putative branch site (score: 3)
tttttac CT-rich tract
ataaaattctgaatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaccctttatttcccgacacattttcttcatttgggtttatttatcttcgaatttgcttgattttgccccatatttcaagattacatttatttgttttgtggattagggataaaattctgaattcagttcctgttgttgtgttaatttttacagTGACAATAGTATTCCAAATGCAATATCTCGCCCCAAACCCATGATTTATCAAGAACCAGTCATTCAAATTCCTTCTGGAACCAATAGGGTTTCTTCTAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC