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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttttttttttttctttttgaccttttaaaaattagaccaaatcttctttttaattgctttgaagggccataatgtgataatcatcatggtataattttctgaaaaattcagagatcaaatgcataatataatgagatgtatgatatattgtaacgtattttggtggattggcttgacagCGTGGTCGGACAAGAAGGAGAGGCAGCGACCATGATCAGGCTTCTGGATCACATATCTCTAATGCTAGAAGATATGATGATTTTGGGCATGGCTCTTCTG

Basic information

species Vitis vinifera
transcript Vv01s0011g04080.t01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110372745|gb|EC936933.1|EC936933
EST:     CCCTTTCTTCAAGAGGGAGGGTCAATGCTCACAGAACCAATAACAGAGAG                         CGTGGTCGGACAAGAAGGAGAGGCA---ACCATGATCAGGCTTCTGGATCA
genomic: CCCTTTCTTCAAGAGGGAGGGTCAATGCTCACAGAACCAATAACAGAGAGgttttttttt ... ggcttgacagCGTGGTCGGACAAGAAGGAGAGGCAGCGACCATGATCAGGCTTCTGGATCA
EST: gi|110421352|gb|EC987648.1|EC987648
EST:     CCCTTTCTTCAAGAGGGAGGGTCAATGCTCACAGAACCAATAACAGAGAG                         CGTGGTCGGACAAGAAGGAGAGGCAGCGACCATGATCAGGCTTCTGGATCA
genomic: CCCTTTCTTCAAGAGGGAGGGTCAATGCTCACAGAACCAATAACAGAGAGgttttttttt ... ggcttgacagCGTGGTCGGACAAGAAGGAGAGGCAGCGACCATGATCAGGCTTCTGGATCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatataatgagatgtatgatatattgtaacgtattttggtggattggcttgacagCGTGGTCGGACAAGAAGGAGAGGCAGCGACCATGATCAGGCTTCTGGATCACATATCTCTAATGCTAGAAGATATGATGATTTTGGGCATGGCTCTTCTG
                       ttgtaac  putative branch site (score: 2)
              tatgatatattgtaa  TA-rich tract