Sequence
atgc intronic sequence ATGC exonic sequence...ttctctattttctttctcccacatttcatttcaaatttttcaaaagtcaaatatagtttatttcaactaacatttttgctttgtatgacttctcttacagGGAATGACAAGGGCATGAAGTTAAGAGTTGCTCCAG
Basic information
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161707041|gb|FC055918.1|FC055918EST: TTTCAAGTGTTTCTGCCGCGATCGTGCTCATGCTGAGTACTGTGTTTCTA GGAATGACAAGGGCAT
genomic: TTTCAAGTGTTTCTGCCGCGATCGTGCTCATGCTAAGTACTGTGTTTCTAgtaagtttca ... tctcttacagGGAATGACAAGGGCAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtcaaatatagtttatttcaactaacatttttgctttgtatgacttctcttacagGGAATGACAAGGGCATGAAGTTAAGAGTTGCTCCAG
aactaac putative branch site (score: 1)
cttctcttac putative PPT
atatagtttatttcaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttctctattttctttctcccacatttcatttcaaatttttcaaaagtcaaatatagtttatttcaactaacatttttgctttgtatgacttctcttacagGGAATGACAAGGGCATGAAGTTAAGAGTTGCTCCAG
- - - - - - -ttctccc
- - - - - - - - - - - - - - - - - - - ttcaaaa
- - - - - - - - - - - - - - - - - - - - - - - - aaatata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caactaa