1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtactcgcttttagcagctatttgatctgtgttcgccaatttgtttagatttttttctaagatacgagcaactgatcttttttatttctatttttgacgtgaattggcgagtagATCGCTCCTACTGGGATCAGAACTGAGGAG
species | Vitis vinifera |
transcript | Vv01s0011g03620.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GATCCGCTTTTCTGGACGTGCAGCAACAGCTGGACCATTGCTTGTTCAAG ATCGCTCCTACTGGGATCAGAACTGAGGAGTGGTATGEST: gi|71864904|gb|DT013959.1|DT013959
genomic: GATCCGCTTTTCTGGACGTGCAGCAACAGCTGGACCATTGCTTGTTCAAGgtactcgctt ... tggcgagtagATCGCTCCTACTGGGATCAGAACTGAGGAGTGGTATG
EST: GATCCGCTTTTCTGGACGTGCAGCAACAGCTGGACCATTGCTTGTTCAAG ATCGCTCCTACTGGGATCAGAACTGAGGAGEST: gi|71870300|gb|DT019355.1|DT019355
genomic: GATCCGCTTTTCTGGACGTGCAGCAACAGCTGGACCATTGCTTGTTCAAGgtactcgctt ... tggcgagtagATCGCTCCTACTGGGATCAGAACTGAGGAG
EST: GATCCGCTTTTCTGGACGTGCAGCAACAGCTGGACCATTGCTTGTTCAAG ATCGCTCCTACTGGGATCAGAACTGAGGAGEST: gi|71863380|gb|DT012435.1|DT012435
genomic: GATCCGCTTTTCTGGACGTGCAGCAACAGCTGGACCATTGCTTGTTCAAGgtactcgctt ... tggcgagtagATCGCTCCTACTGGGATCAGAACTGAGGAG
EST: GATCCGCTTTTCTGGACGTGCAGCAACAGCTGGACCATTGCTTGTTCAAG ATCGCTCCTACTGGGATCAGAACTGAGGAGEST: gi|71863974|gb|DT013029.1|DT013029
genomic: GATCCGCTTTTCTGGACGTGCAGCAACAGCTGGACCATTGCTTGTTCAAGgtactcgctt ... tggcgagtagATCGCTCCTACTGGGATCAGAACTGAGGAG
EST: GATCCGCTTTTCTGGACGTGCAGCAACAGCTGGACCATTGCTTGTTCAAG ATCGCTCCTACTGGGATCAGAACTGAGGAGEST: gi|71866817|gb|DT015872.1|DT015872
genomic: GATCCGCTTTTCTGGACGTGCAGCAACAGCTGGACCATTGCTTGTTCAAGgtactcgctt ... tggcgagtagATCGCTCCTACTGGGATCAGAACTGAGGAG
EST: GATCCGCTTTTCTGGACGTGCAGCAACAGCTGGACCATTGCTTGTTCAAG ATCGCTCCTACTGGGATCAGAACTGAGGAGEST: gi|71861822|gb|DT010877.1|DT010877
genomic: GATCCGCTTTTCTGGACGTGCAGCAACAGCTGGACCATTGCTTGTTCAAGgtactcgctt ... tggcgagtagATCGCTCCTACTGGGATCAGAACTGAGGAG
EST: GATCCGCTTTTCTGGACGTGCAGCAACAGCTGGACCATTGCTTGTTCAAG ATCGCTCCTACTGGGATCAGAACTGAGGAGEST: gi|71861840|gb|DT010895.1|DT010895
genomic: GATCCGCTTTTCTGGACGTGCAGCAACAGCTGGACCATTGCTTGTTCAAGgtactcgctt ... tggcgagtagATCGCTCCTACTGGGATCAGAACTGAGGAG
EST: GATCCGCTTTTCTGGACGTGCAGCAACAGCTGGACCATTGCTTGTTCAAG ATCGCTCCTACTGGGATCAGAACTGAGGAGEST: gi|161707839|gb|FC055239.1|FC055239
genomic: GATCCGCTTTTCTGGACGTGCAGCAACAGCTGGACCATTGCTTGTTCAAGgtactcgctt ... tggcgagtagATCGCTCCTACTGGGATCAGAACTGAGGAG
EST: GATCCGCTTTTCTGGACGTGCAGCAACAGCTGGACCATTGCTTGTTCAAG ATCGCTCCTACTGGGATCAGAACTGAGGAGEST: gi|71863921|gb|DT012976.1|DT012976
genomic: GATCCGCTTTTCTGGACGTGCAGCAACAGCTGGACCATTGCTTGTTCAAGgtactcgctt ... tggcgagtagATCGCTCCTACTGGGATCAGAACTGAGGAG
EST: GATCCGCTTTTCTGGACGTGCAGCAACAGCTGGACCATTGCTTGTTCAAG ATCGCTCCTACTGGGATCAGAACTGAGGAG
genomic: GATCCGCTTTTCTGGACGTGCAGCAACAGCTGGACCATTGCTTGTTCAAGgtactcgctt ... tggcgagtagATCGCTCCTACTGGGATCAGAACTGAGGAG
agatacgagcaactgatcttttttatttctatttttgacgtgaattggcgagtagATCGCTCCTACTGGGATCAGAACTGAGGAG
ttttgac putative branch site (score: 3)
tgatcttttttatttc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactcgcttttagcagctatttgatctgtgttcgccaatttgtttagatttttttctaagatacgagcaactgatcttttttatttctatttttgacgtgaattggcgagtagATCGCTCCTACTGGGATCAGAACTGAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG