Sequence
atgc intronic sequence ATGC exonic sequencegtatttctttatctctctctctctctctctctctctctctgcgtgtgttcatataatgtgaataatgttgtgatgtttggtttgagattttacgaaaacgggattgttggttttgtagGTTCACTTGGAATATTTGGAGGCTGGTGCCGATATATTGGTGACTTCATCTTACCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0011g03500.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA08G30150.2 (Glycine max), 3'ss of exon 1
--gtatttctttatctctctctctctctctctctctctctctgcgtgtgttcatataatgtga-ataatgttgtgatgtttggtt-tgagattttacgaaaacgggattgttggttt--tgtagGTTCACTTGGAATATTTGGAGGCTGGTGCCGATATATTGGTGACTTCATCTTACCAG
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gtttttttcatcacaaggctggaaccgagatagtccaataccacttggaataatcccgtgtcttgttttgcatgtatgggtgatgatgaatatttattggatttgatttgtttgtttgttttagGTTCACTTGGAATACTTGGAGGCTGGTGCTGATATATTGGTTACTTCATCATACCAG
upper sequence: Vv01s0011g03500.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA08G30150.1 (Glycine max), 3'ss of exon 1
-----gtatttctttatctctctctctctctctctctctctctctgcgtgtgttcatataatgtgaataatgttgtgatgtttggtttgagattttacgaaaacgggattgttggttttgtagGTTCACTTGGAATATTTGGAGGCTGGTGCCGATATATTGGTGACTTCATCTTACCAG
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ccgagatagtccaataccacttggaataatcccgtgtcttgttttgcatgtatgggtg----atgatgaatatt----tattggatttga---tttgt----------ttgtttgtttt--agGTTCACTTGGAATACTTGGAGGCTGGTGCTGATATATTGGTTACTTCATCATACCAG
upper sequence: Vv01s0011g03500.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT3G25900.2 (Arabidopsis thaliana), 3'ss of exon 1
gtatttctttatctctctctctctctctctctctctctctgcgtgtgttcatataatgtgaataat--gttgtgatgtttggtttgagattttacgaaaacgggattgttggttttgtagGTTCACTTGGAATATTTGGAGGCTGGTGCCGATATATTGGTGACTTCATCTTACCAG
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--------------------cacagatctttagggttttattgttaattcgaagatttttaatttctgggtctgaagatttggataacaatggacagagtttgatgaaatttttgtttagGTTCACATGGAATATTTGGAAGCTGGTGCAGACATTGTGGTTACTTCATCTTATCAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110701831|gb|EE079851.1|EE079851EST: CTCTCTGGAGCGCTCTTTGTTTGATCAAAGACCCTGACCTCATCAAACGG GTTCACTTGGAATATTTGGAGGCTGGTGCCGATATATTGGTGACTTCATCT
genomic: CTCTGTGGAGCGCTCTTTGTTTGATCAAAGACCCTGACCTCATCAAACGGgtatttcttt ... ggttttgtagGTTCACTTGGAATATTTGGAGGCTGGTGCCGATATATTGGTGACTTCATCT
EST:
gi|71855832|gb|DT004887.1|DT004887EST: CTCTCTGGAGCGCTCTTTGTTTGATCAAAGACCCTGACCTCATCAAACGG GTTCACTTGGAATATTTGGAGGCTGGTGCCGATATATTGGTGACTTCATCT
genomic: CTCTGTGGAGCGCTCTTTGTTTGATCAAAGACCCTGACCTCATCAAACGGgtatttcttt ... ggttttgtagGTTCACTTGGAATATTTGGAGGCTGGTGCCGATATATTGGTGACTTCATCT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aatgttgtgatgtttggtttgagattttacgaaaacgggattgttggttttgtagGTTCACTTGGAATATTTGGAGGCTGGTGCCGATATATTGGTGACTTCATCTTACCAG
agatttta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatttctttatctctctctctctctctctctctctctctgcgtgtgttcatataatgtgaataatgttgtgatgtttggtttgagattttacgaaaacgggattgttggttttgtagGTTCACTTGGAATATTTGGAGGCTGGTGCCGATATATTGGTGACTTCATCTTACCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG