1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtacatttactgcactcttttattgaattagtttgtgaggaatgtaagtctattgggtctgatttctgtggagaaactaggcttattgaactcaattgcttcctacatttcagGTGAAACCAAAGGGTGTAACCATGACTGCTTTGTTAGCAAAGGCAGCAGCTATGGCACTTGCTCAGCACCCAGTTGTTAATGCAAGTTGTAAAGATGGGA
species | Vitis vinifera |
transcript | Vv01s0011g03380.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCGTTGGGTATCCAGTGTTAACTGATAAGCTGGATGCTCTATATGAGAAG GTGAAACCAAAGGGTGTAACCATGACTGCTTTGTTAGCAAAGGCAGCAGCTEST: gi|77583069|gb|DV220571.1|DV220571
genomic: GCGTTGGGTATCCAGTGTTAACTGATAAGCTGGATGCTCTATATGAGAAGgtacatttac ... tacatttcagGTGAAACCAAAGGGTGTAACCATGACTGCTTTGTTAGCAAAGGCAGCAGCT
EST: GCGTTGGGTATCCAGTGTTAACTGATAAGCTGGATGCTCTATATGAGAAG GTGAAACCAAAGGGTGTAACCATGACTGCTTTGTTAGCAAAGGCAGCAGCT
genomic: GCGTTGGGTATCCAGTGTTAACTGATAAGCTGGATGCTCTATATGAGAAGgtacatttac ... tacatttcagGTGAAACCAAAGGGTGTAACCATGACTGCTTTGTTAGCAAAGGCAGCAGCT
ctgatttctgtggagaaactaggcttattgaactcaattgcttcctacatttcagGTGAAACCAAAGGGTGTAACCATGACTGCTTTGTTAGCAAAGGCAGCAGCTATGGCACTTGCTCAGCACCCAGTTGTTAATGCAAGTTGTAAAGATGGGA
gtctgat putative branch site (score: 4)
ttgcttcct putative PPT
ttattgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacatttactgcactcttttattgaattagtttgtgaggaatgtaagtctattgggtctgatttctgtggagaaactaggcttattgaactcaattgcttcctacatttcagGTGAAACCAAAGGGTGTAACCATGACTGCTTTGTTAGCAAAGGCAGCAGCTATGGCACTTGCTCAGCACCCAGTTGTTAATGCAAGTTGTAAAGATGGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG