Sequence
atgc intronic sequence ATGC exonic sequence...ttatattcctcggagaagtaatttagggaacctatccagggaaaacatgattttacctaattattttttcatctggtgtatcctgtatctatttctgtagATGCATATGTGGGGTCATGGATCACAATACAGAAAGGGCCCGGAGTCGTTAAGAGGGACAAAGCCAGCTTCATCCATTCTTAGGTTGCCATGTTACTGTT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0011g03100.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA20G32750.1 (Glycine max), 3'ss of exon 2
ttatattcctcggagaagtaatttagggaacct-atccaggga--aaacatgattttacctaattattttttcatctggtgtatcctgtatctatttctgtagATGCATATGTGGGGTCATGGATCACAATACAGAAAGGGCCCGGAGTCGTTAAGAGGGACAAAGCCAGCTTCATCCATTCTTAGGTTGCCATGTTACTGTT
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--ccagtac-catagcatcattttgttgcactttattttgctctcaagaatgggcttacataataactttataatgtgactcacatcacatgattttctgtagATGCATATGTGGGGACATGGATCCCAGTATAGGAAAGGATCGAATTCATTGAGAGGGTCAAAAGCAGGTTCTCTAATGCTGAGGCTACCCTGCTATTGCT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.catgattttacctaattattttttcatctggtgtatcctgtatctatttctgtagATGCATATGTGGGGTCATGGATCACAATACAGAAAGGGCCCGGAGTCGTTAAGAGGGACAAAGCCAGCTTCATCCATTCTTAGGTTGCCATGTTACTGTT
acctaat putative branch site (score: 3)
tctatttct putative PPT
ttttacctaattattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttatattcctcggagaagtaatttagggaacctatccagggaaaacatgattttacctaattattttttcatctggtgtatcctgtatctatttctgtagATGCATATGTGGGGTCATGGATCACAATACAGAAAGGGCCCGGAGTCGTTAAGAGGGACAAAGCCAGCTTCATCCATTCTTAGGTTGCCATGTTACTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - -agaagtaa
- - - - - - - - - - - - - - - -ctatcca
- - - - - - - - - - - - - - - - - - - gggaaaa
- - - - - - - - - - - - - - - - - - - - - - -catgatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtatcc