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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtcatatttgattagctttgtttaactaactttttaactgtaactaaccgtggttttttgagtgcagATGTTTCTTACAACATTGACTGCGGCGGCTCCACCAATTCCGTCGACCAGTTTAACAGGACTTGGCTCTCCGACCGCAACTACACCGGTGGTTCCACCGG

Basic information

species Vitis vinifera
transcript Vv01s0011g03060.t01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37185831|gb|CF605184.1|CF605184
EST:     CCCAATCCTCTTCTCGCCATTGTCATCCTCTGAAGTTCAATATCCATTCA                         ATGTTTCTTACAACATTGACTGCGGCGGCTCCACCAATTCCGTCGACCAGT
genomic: CCCAATCCTCTTCTCGCCATTGTCATCCTCTGAAGTTCAATATCCATTCAgtaagtcata ... ttgagtgcagATGTTTCTTACAACATTGACTGCGGCGGCTCCACCAATTCCGTCGACCAGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagctttgtttaactaactttttaactgtaactaaccgtggttttttgagtgcagATGTTTCTTACAACATTGACTGCGGCGGCTCCACCAATTCCGTCGACCAGTTTAACAGGACTTGGCTCTCCGACCGCAACTACACCGGTGGTTCCACCGG
                             aactaac  putative branch site (score: 1)
                                         tttttt  putative PPT
        tttaactaacttttta  TA-rich tract