Sequence
atgc intronic sequence ATGC exonic sequencegtctgtcctctctctttatataaatataaaataaaaagtgactcatgtgttttctttcttttgtcatggctttggaagtaaaattttctgtgttggtggaacagGTAGATTGGAGGAGAACGTTGAATTTAGCATTTCAGAGCATAGGGGTGGTATATGGAGATATAGGGACCTCTCCGCTCTATGTGTTTTCCAGCACTTTCA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0011g03020.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: LOC_Os01g70490.1 (Oryza sativa), 3'ss of exon 1
gtctgtcctctctctttatataaatataaaataaaaagtgactcatgtgttttctttcttttgtcatggctttggaagtaaaattttctgtgttggtggaac--agGTAGATTGGAGGAGAACGTTGAATTTAGCATTTCAGAGCATAGGGGTGGTATATGGAGATATAGGGACCTCTCCGCTCTATGTGTTTTCCAGCACTTTCA
|| ||| || | | || || ||| | | ||| | ||| | || | | | | | || || || ||| |||| | ||| || || | | || || || ||||||||||| ||||| ||||| || || ||||| ||||| ||||||||||| |||||||| || |
----atcatcttaagttttgcatgactagtgtagcaagaaga--agagatcttcatgtgagccgaatgcaatctgatttgagaatatgcttgatgctgaaacacagGTTGGATGGGCGACCACACTACACTTGGCCTTCCAGAGCATAGGCGTGGTTTATGGGGACATGGGGACTTCTCCCCTCTATGTGTTCTCCAGCACCTTTA
upper sequence: Vv01s0011g03020.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GRMZM2G084779_T02 (Zea mays), 3'ss of exon 1
gtctgtcctctctctttatataaatataaaataaaaagtgactcatgtgttttctttcttttgtcatggctttggaagtaaaattttctgtgttggtggaacagGTAGATTGGAGGAGAACGTTGAATTTAGCATTTCAGAGCATAGGGGTGGTATATGGAGATATAGGGACCTCTCCGCTCTATGTGTTTTCCAGCACTTTCA
| | | | |||| | | | | || || ||||||| | | | | | | | | | | ||||| |||| | ||| || || || | ||||||| ||||||||||| ||||| || ||||| || ||||| |||||||||||||| || |||||||| ||||
----ctaagggttgtgtgcctaaaagcatattgtctgctttctttcttgctttcttttcgaggcaaatgtaatctgattcagagtatgcactttggtaatgaagGTTGGCTGGGCGACCACACTGCACCTAGCATTCCAGAGCATAGGTGTGGTCTACGGAGACATGGGGACTTCTCCGCTCTATGTTTTCTCCAGCACCTTCA
upper sequence: Vv01s0011g03020.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA19G45260.1 (Glycine max), 3'ss of exon 1
gtctgtcctctctctttatataaatataaaataaaaagtgactcatgtgttttctttcttttgtcatggctttggaagtaaaattttctgtgttggtggaacagGTAGATTGGAGGAGAACGTTGAATTTAGCATTTCAGAGCATAGGGGTGGTATATGGAGATATAGGGACCTCTCCGCTCTATGTGTTTTCCAGCACTTTCA
|| ||| | | ||| | || | | | || ||||| | | || | || || || | |||| | | |||||||| ||| ||| ||||||||||| ||||||||||||||||| || ||||| || || || || || ||||||| | | ||||| ||||
-----------------------gtactccatacacgttaactaaccc-ttgtatatattcgatcatgcccatataattggcatctta---attactatgacagATGGGTTGGAGGACGACGCTGATCTTAGCATTTCAAAGCATAGGGGTGGTATACGGTGATATTGGTACATCACCACTTTATGTGTATGCAAGCACCTTCA
upper sequence: Vv01s0011g03020.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT4G13420.1 (Arabidopsis thaliana), 3'ss of exon 2
gtctgtcctctctctttatataaatataaaataaaaagtgactcatgtgttttctttcttttgtcatggctttggaagtaaaattttctgtgttggtggaacagGTAGATTGGAGGAGAACGTTGAATTTAGCATTTCAGAGCATAGGGGTGGTATATGGAGATATAGGGACCTCTCCGCTCTATGTGTTTTCCAGCACTTTCA
| | || |||| | || | || | || || | | ||||| | | || | ||| || || | ||||| | |||| ||| ||| |||||||||||| |||| ||||| ||||||||||| ||||| || || | ||||||| | | || |||||||
-----------------gtgtgtatctaaa-tctctcttgtttgataagaagatgatcattaatataagatttggtgatcgtgaataatg-atgtgtgaaatagATGAGCTGGAGAACAACGATGAGTTTGGCATTTCAGAGCCTAGGAGTGGTGTATGGAGATATCGGGACATCGCCATTATATGTGTATGCAAGTACTTTCAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161718824|gb|FC066996.1|FC066996EST: TCAATTTGGAGGCTGGACGAGTTTCTACTGCCGGAGGCCACACCTCCAAG GTAGATTGGAGGAGAACGTTGAATTTAGCATTTCAGAGCATAGGGGTGGTA
genomic: TCAATTTGGAGGCTGGACGAGTTTCTACTGCCGGAGGCCACACCTCCAAGgtctgtcctc ... ggtggaacagGTAGATTGGAGGAGAACGTTGAATTTAGCATTTCAGAGCATAGGGGTGGTA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttttctttcttttgtcatggctttggaagtaaaattttctgtgttggtggaacagGTAGATTGGAGGAGAACGTTGAATTTAGCATTTCAGAGCATAGGGGTGGTATATGGAGATATAGGGACCTCTCCGCTCTATGTGTTTTCCAGCACTTTCA
aagtaaaattttct TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtctgtcctctctctttatataaatataaaataaaaagtgactcatgtgttttctttcttttgtcatggctttggaagtaaaattttctgtgttggtggaacagGTAGATTGGAGGAGAACGTTGAATTTAGCATTTCAGAGCATAGGGGTGGTATATGGAGATATAGGGACCTCTCCGCTCTATGTGTTTTCCAGCACTTTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT