Sequence
atgc intronic sequence ATGC exonic sequence...attattgcttaatctctgaaagtcttgagcttttaccattacaatttggtttagtatcatgctaacatcctaattgtatcttttcaatcttcttctgcagGGAGTCTCTTGTGATCTCTATGATGGTTTCTGGTATGTCACTGCCTTAAACATTGGACCTGTTCAAGACAACTCTCTTGATTGTGCCCATAATGTGGAAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0011g02800.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA10G34950.1 (Glycine max), 3'ss of exon 1
-----attattgcttaatctctgaaagtcttgagcttttaccattacaatttggtttagtatcatgctaacatcctaattgtatcttttcaatcttcttctgcagGGAGTCTCTTGTGATCTCTATGATGGTTTCTGGTATGTCACTGCCTTAAACATTGGACCTGTTCAAGACAACTCTCTTGATTGTGCCCATAATGTGGAAT
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tcagaactctttgcaatttaatacaaaaattataaattaactagaacatgttgataaattatt-tgcta-cattgtgatt---tctttgttgttttcttctgcagGGGGTCTCTTGTGATCTGTTTGATGGATTTTGGTATGTTACTGCCTTGAACATTGGACCGGTCCATGACAATTCTCTGAGTTGTGCTCAAGAATTGGAAT
upper sequence: Vv01s0011g02800.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA20G32610.1 (Glycine max), 3'ss of exon 1
-attattgcttaatctctgaaagtc---ttgagcttttaccattacaatttggtttagtatcatgctaacatcctaattgtatcttttcaatcttcttctgcagGGAGTCTCTTGTGATCTCTATGATGGTTTCTGGTATGTCACTGCCTTAAACATTGGACCTGTTCAAGACAACTCTCTTGATTGTGCCCATAATGTGGAAT
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aatcactctttgcaattcaatactgaaattgtaacttaactagaacatggtgattaattatt-tgtttaattgtgttttctgtgttt---gttttcttctgtagGGGGTCTCTTGTGATCTGTTTGATGGATTTTGGTATGTAACTGCCTTGAACATTGGACCGGTCCATGACAATTCTCTGAGTTGTGCTCAAGATTTGGAAT
upper sequence: Vv01s0011g02800.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA01G22730.1 (Glycine max), 3'ss of exon 1
attattgcttaatctctgaaagtc--ttgagcttttaccattacaatttggtttagtatcatgctaacatcctaattgtatcttttca--atcttcttctgcagGGAGTCTCTTGTGATCTCTATGATGGTTTCTGGTATGTCACTGCCTTAAACATTGGACCTGTTCAAGACAACTCTCTTGATTGTGCCCATAATGTGGAAT
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--aaatcaaaattctttacaattcaaccaagaagttataaattt--tccaaaacagtatggtcttaaaatgttgtttaatacttattattgttttctgctgcagGGGGTCTCTTGTGATCTGTTTAATGGATTTTGGTATGTTACTGTCTTGAACATTGGACCAATCCACGATAATTCTCTAAGTTGTGCCAAAATTTTGGAAT
upper sequence: Vv01s0011g02800.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA09G16650.1 (Glycine max), 3'ss of exon 1
--attattgcttaatctctgaaagtc--ttgagcttttaccattacaatttggtttagtatcatgctaacatcctaattgtatcttttcaatcttcttctgcagGGAGTCTCTTGTGATCTCTATGATGGTTTCTGGTATGTCACTGCCTTAAACATTGGACCTGTTCAAGACAACTCTCTTGATTGTGCCCATAATGTGGAAT
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ttagaactctttgcaattcaatactaaattgtaacttaactagaacaaggtgattaattatt-tacttaattgtgttttctgtgttt---gttttcttctatagGGGGTCTCTTGTGATCTATTTGATGGATTTTGGTATGTAACTACCTTGAACATTGGACCAGTCCATGATAATTCTCTGAGTTGTGCTCAAGATTTGGAAT
upper sequence: Vv01s0011g02800.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA02G11350.1 (Glycine max), 3'ss of exon 1
attattgcttaatctctgaaagtcttgagcttttaccattacaatttggtttagtatcatgctaacatcctaattgtatct-tttcaatcttcttctgcagGGAGTCTCTTGTGATCTCTATGATGGTTTCTGGTATGTCACTGCCTTAAACATTGGACCTGTTCAAGACAACTCTCTTGATTGTGCCCATAATGTGGAAT
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atcaaaatctttactattaaa-ccaagaattataaaatttccaaaacagtttgatcttaaaatattgttaaattcgtatttattattgttttctgctgcagGGGGTGTCTTGTGATCTGTTTAATGGATTTTGGTATGTTACTGTCTTGAACATTGGACCAATCCACGACAATTCTCTAAGTTGTGCCAAAAATTTGGAAT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttggtttagtatcatgctaacatcctaattgtatcttttcaatcttcttctgcagGGAGTCTCTTGTGATCTCTATGATGGTTTCTGGTATGTCACTGCCTTAAACATTGGACCTGTTCAAGACAACTCTCTTGATTGTGCCCATAATGTGGAAT
tcttttcaatcttctt CT-rich tract
taattgtatctttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
attattgcttaatctctgaaagtcttgagcttttaccattacaatttggtttagtatcatgctaacatcctaattgtatcttttcaatcttcttctgcagGGAGTCTCTTGTGATCTCTATGATGGTTTCTGGTATGTCACTGCCTTAAACATTGGACCTGTTCAAGACAACTCTCTTGATTGTGCCCATAATGTGGAAT
- - - - - - -ctctgaa
- - - - - - - - - - - - - - - - - -ccattac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tcatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catccta