Sequence
atgc intronic sequence ATGC exonic sequence...agatctagttatttcactttccaatgttggtatgagatgaatttctaatccatccgattctcaactattagaagctttctgatcgtttatttttattcagGGTAGGCTACAGATGGATTACAAGATTTCTTGCACTTGGTTGTTATGCCTTACTACTTATGCCAGGTTTTATTCAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0011g02530.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA16G18930.1 (Glycine max), 3'ss of exon 1
--------agatctagttatttcactttccaatgttggtatgagatgaatttctaatccatccgattctcaactattagaagctttctgatcgtttatttttattcagGGTAGGCTACAGATGGATTACAAGATTTCTTGCACTTGGTTGTTATGCCTTACTACTTATGCCAGGTTTTATTCAAG
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tggttttaagatgaaatt-taacatcttgtt-tgtttgttttacatgaat-----atctttgcatgtaccagttat-ggatgctttctgataatttatttctgttcagGGTAGGCTATAAATGGATTACAAAGTTTCTTGCCCTTGGTTGTTATGCAGTACTCCTTTTCCCAGGCTTTATTCAAG
upper sequence: Vv01s0011g02530.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT1G26120.1 (Arabidopsis thaliana), 3'ss of exon 1
agatctagttatttcactttccaatgttggtatgagatgaattt-------ctaatccatccg-attctcaac----tattagaag-----cttt--------------ctgatcgtttatttttattcagGGTAGGCTACAGATGGATTACAAGATTTCTTGCACTTGGTTGTTATGCCTTACTACTTATGCCAGGTTTTATTCAAG
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gtatctatctatttcctccgttatctgttacatttgctgaatccgacgaaattggctcatcgatattcttaggcatatataaaaagatgatctttggtttgatcgatcactgatcaaaaactattattcagGGTAGGTTATAGATGGATTACAAGATTTATGGCACTTGGGTGTTATGCATTTCTACTAATGCCAGGCTTTATTCAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.taatccatccgattctcaactattagaagctttctgatcgtttatttttattcagGGTAGGCTACAGATGGATTACAAGATTTCTTGCACTTGGTTGTTATGCCTTACTACTTATGCCAGGTTTTATTCAAG
tttattttt CT-rich tract
atcgtttatttttatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
agatctagttatttcactttccaatgttggtatgagatgaatttctaatccatccgattctcaactattagaagctttctgatcgtttatttttattcagGGTAGGCTACAGATGGATTACAAGATTTCTTGCACTTGGTTGTTATGCCTTACTACTTATGCCAGGTTTTATTCAAG
- - - - - - - - - - ccaatgt
- - - - - - - - - - - - - - ggtatga
- - - - - - - - - - - - - - - - - - - - - - - - tccatcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tctcaac