1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tataacactttaattcgctgaattgagtgggaaatgaaaaaatgttgataactttattattttggatctttctaaagatattgcttgtttctttttccagGTTGAGCTTGCTGCACTTCTCCATGACATAG
species | Vitis vinifera |
transcript | Vv01s0011g02070.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTCTCGCCCTTGAAGAAGGTCTCTCTTCTTCCTCCGATTCAATGGAGATC GTTGAGCTTGCTGCACTTCTCCATGACATAGEST: gi|294965477|gb|GW839048.1|GW839048
genomic: CTCTCGCCCTTGAAGAAGGTCTCTCTTCTTCCTCCGATTCAATGGAGATCgtaagttcat ... ctttttccagGTTGAGCTTGCTGCACTTCTCCATGACATAG
EST: TCTCTCTTCTTCCTCCGATTCAATGGAGATC GTTGAGCTTGCTGCACTTCTCCATGACATAGEST: gi|110415762|gb|EC981694.1|EC981694
genomic: TCTCTCTTCTTCCTCCGATTCAATGGAGATCgtaagttcat ... ctttttccagGTTGAGCTTGCTGCACTTCTCCATGACATAG
EST: CTCTCGCCCTTGAAGAAGGTCTCTCTTCTTCCTCCGATTCAATGGAGATC GTTGAGCTTGCTGCACTTCTCCATGACATAGEST: gi|37190640|gb|CF609989.1|CF609989
genomic: CTCTCGCCCTTGAAGAAGGTCTCTCTTCTTCCTCCGATTCAATGGAGATCgtaagttcat ... ctttttccagGTTGAGCTTGCTGCACTTCTCCATGACATAG
EST: CTCTCGCCCTTGAAGAAGGTCTCTCTTCTTCCTCCGATTCAATGGAGATC GTTGAGCTTGCTGCACTTCTCCATGACATAGEST: gi|161706694|gb|FC055885.1|FC055885
genomic: CTCTCGCCCTTGAAGAAGGTCTCTCTTCTTCCTCCGATTCAATGGAGATCgtaagttcat ... ctttttccagGTTGAGCTTGCTGCACTTCTCCATGACATAG
EST: CTCTCGCCCTTGAAGAAGGTCTCTCTTCTTCCTCCGATTCAATGGAGATC GTTGAGCTTGCTGCACTTCTCCATGACATAG
genomic: CTCTCGCCCTTGAAGAAGGTCTCTCTTCTTCCTCCGATTCAATGGAGATCgtaagttcat ... ctttttccagGTTGAGCTTGCTGCACTTCTCCATGACATAG
tgataactttattattttggatctttctaaagatattgcttgtttctttttccagGTTGAGCTTGCTGCACTTCTCCATGACATAG
ttctaaa putative branch site (score: 2)
ttgcttgtttcttttt putative PPT
tttattattttggat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tataacactttaattcgctgaattgagtgggaaatgaaaaaatgttgataactttattattttggatctttctaaagatattgcttgtttctttttccagGTTGAGCTTGCTGCACTTCTCCATGACATAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
-ataacac
- - - - - - - - - - - - gagtggg
- - - - - - - - - - - - - - - - - - aaaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaagata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcttgt