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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtaatttattcactagattcacatgcagagactcatattttcgatcttctcacatctctatgtgtgtcacgagacagTCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTCAGGCCAAACATCTCTAGGGATCAAAG

Basic information

species Vitis vinifera
transcript Vv01s0011g01960.t01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0011g01960.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA03G16660.1 (Glycine max), 3'ss of exon 2
-------------------------gtaagtaattta---ttcactagattcac----atgcagagactcatattttcgatcttctcacatctctatgt-gtgtcacgagacagTCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTCAGGCCAAACATCTCTAGGGATCAAAG
                           || ||||||    || | | ||||       ||| ||||| |  | |  |   |  | |||  |   | ||| ||||   |  |||| ||||| ||||||||||||||||| |||||||| ||||| ||||||||||| || ||||| ||| | || || ||||
gtattgttattactgataactttttaaaattaattttaatttgatttgatttttgtttatgaagagaatggtgtggtgtgtggtttcaactaattgtgttgtgttgtggaacagCCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCTTTGACAGCCGTTGGCTCTGGACAAACGTCTTTGGGAATAAAAG

upper sequence: Vv01s0011g01960.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA01G25940.2 (Glycine max), 3'ss of exon 1
-----------------gtaagtaattt-attcactagattcacatgcagagactcatattttcgatcttctcacatctctatgt-gtgtcacgagacagTCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTCAGGCCAAACATCTCTAGGGATCAAAG
                  |||||||||| |||   |   |    ||| ||||| |  | |  |   |  | |||  |   | ||| ||||   |  |||| ||||| ||||||||||||||||| |||||||| ||||| || |||||||| || || || ||| | || || ||||
gtattgttcttactgatttaagtaatttgatttgatttttgtttatgaagagaatggtgtggtgtgtggtttcaactaattgtgttgtgttgtggaacagCCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCCTTGACAGCTGTTGGCTCTGGACAGACGTCTTTGGGAATAAAAG

upper sequence: Vv01s0011g01960.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA15G41330.1 (Glycine max), 3'ss of exon 2
----------------------------------------gtaagtaatttattcactagattcacatgcagagactcatattttcgatc-ttctcacatctctatgtgtgtcacgagacagTCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTCAGGCCAAACATCTCTAGGGATCAAAG
                                         | | | | |||||   || ||  | ||  |  |     |  ||    |  || | | || | |   |||||   |  |||| ||||| ||||||||||||||||| |||||||| ||||| || ||||| || || ||||| ||| | || || ||||
gtatggttagaatcgctgataacttttaatttggtttattatgatttaattattgtttatatgaa-atagaatggtgtgtgcttcaactgattgtgatatgttttgttgtgttgtggaacagCCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCTTTGACGGCTGTTGGGTCTGGACAAACGTCTTTGGGAATTAAAG

upper sequence: Vv01s0011g01960.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA08G17810.5 (Glycine max), 3'ss of exon 2
-----------------------gtaagtaatttattcactagattcacatgcagagactcatattttcgatcttctcacatctctatgtgtgtcacgagacagTCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTCAGGCCAAACATCTCTAGGGATCAAAG
                         |  |  |||| |   | | ||    |  |||||    |||  |   | ||   ||   | |   |||||   |  |||| ||||| ||||||||||||||||| |||||||| ||||| || || || || || ||||| ||| | || || ||||
gtattgttattgctcttaactttcaatttggtttaattttttgtttatattaaagagaagggtatggtttgtgtttcaactgatttcgttgtgttgtggaacagCCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCTTTGACGGCTGTCGGGTCTGGACAAACGTCTTTGGGAATTAAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71865818|gb|DT014873.1|DT014873
EST:     TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAG                         TCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
genomic: TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAGgtaagtaatt ... cacgagacagTCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
EST: gi|351024618|gb|FQ433033.1|FQ433033
EST:     TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAG                         TCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
genomic: TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAGgtaagtaatt ... cacgagacagTCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
EST: gi|351049257|gb|FQ429000.1|FQ429000
EST:     TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAG                         TCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
genomic: TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAGgtaagtaatt ... cacgagacagTCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
EST: gi|349824580|gb|FQ413247.1|FQ413247
EST:     TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAG                         TCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
genomic: TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAGgtaagtaatt ... cacgagacagTCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
EST: gi|349823294|gb|FQ400273.1|FQ400273
EST:     TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAG                         TCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
genomic: TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAGgtaagtaatt ... cacgagacagTCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
EST: gi|161721034|gb|FC069643.1|FC069643
EST:     TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAG                         TCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
genomic: TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAGgtaagtaatt ... cacgagacagTCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
EST: gi|351024239|gb|FQ423662.1|FQ423662
EST:     TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAG                         TCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
genomic: TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAGgtaagtaatt ... cacgagacagTCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
EST: gi|26262020|gb|CA813083.1|CA813083
EST:     TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAG                         TCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
genomic: TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAGgtaagtaatt ... cacgagacagTCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
EST: gi|351055959|gb|FQ453420.1|FQ453420
EST:     TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAG                         TCCTTCGGGAAAGCTTGTTCGGATCGAGCATGCATTGACCGCCGTTGGCTC
genomic: TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAGgtaagtaatt ... cacgagacagTCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
EST: gi|351043200|gb|FQ443921.1|FQ443921
EST:     AAACAAACATGAGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAG                         TCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
genomic: AAACAAACATG-GGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAGgtaagtaatt ... cacgagacagTCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
EST: gi|349833395|gb|FQ420141.1|FQ420141
EST:     TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAG                         TCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
genomic: TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAGgtaagtaatt ... cacgagacagTCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
EST: gi|352786780|gb|FQ481155.1|FQ481155
EST:     TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAG                         TCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
genomic: TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAGgtaagtaatt ... cacgagacagTCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
EST: gi|110732497|gb|EE107834.1|EE107834
EST:     TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACCTTCAG                         TCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
genomic: TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAGgtaagtaatt ... cacgagacagTCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
EST: gi|294965519|gb|GW839090.1|GW839090
EST:     TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAG                         TCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
genomic: TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAGgtaagtaatt ... cacgagacagTCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
EST: gi|349828007|gb|FQ422875.1|FQ422875
EST:     TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAG                         TCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
genomic: TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAGgtaagtaatt ... cacgagacagTCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
EST: gi|351033855|gb|FQ447893.1|FQ447893
EST:     TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAG                         TCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
genomic: TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAGgtaagtaatt ... cacgagacagTCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
EST: gi|351031393|gb|FQ445418.1|FQ445418
EST:     TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAG                         TCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
genomic: TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAGgtaagtaatt ... cacgagacagTCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
EST: gi|110709321|gb|EE084677.1|EE084677
EST:     TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACCTTCAG                         TCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
genomic: TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAGgtaagtaatt ... cacgagacagTCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
EST: gi|18459130|gb|BM437408.1|BM437408
EST:     TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAG                         TCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
genomic: TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAGgtaagtaatt ... cacgagacagTCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
EST: gi|71874592|gb|DT023647.1|DT023647
EST:     TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAG                         TCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
genomic: TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAGgtaagtaatt ... cacgagacagTCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
EST: gi|161719842|gb|FC066700.1|FC066700
EST:     TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACCTTCAG                         TCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
genomic: TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAGgtaagtaatt ... cacgagacagTCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
EST: gi|351034587|gb|FQ457944.1|FQ457944
EST:     TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAG                         TCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
genomic: TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAGgtaagtaatt ... cacgagacagTCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
EST: gi|351056934|gb|FQ443561.1|FQ443561
EST:     TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAG                         TCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
genomic: TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAGgtaagtaatt ... cacgagacagTCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
EST: gi|71865594|gb|DT014649.1|DT014649
EST:     TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAG                         TCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
genomic: TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAGgtaagtaatt ... cacgagacagTCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
EST: gi|351026121|gb|FQ428133.1|FQ428133
EST:     TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAG                         TCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
genomic: TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAGgtaagtaatt ... cacgagacagTCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
EST: gi|110722035|gb|EE097915.1|EE097915
EST:     TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACCTTCAG                         TCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
genomic: TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAGgtaagtaatt ... cacgagacagTCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
EST: gi|71875837|gb|DT024892.1|DT024892
EST:     TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAG                         TCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
genomic: TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAGgtaagtaatt ... cacgagacagTCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
EST: gi|351025845|gb|FQ427857.1|FQ427857
EST:     TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAG                         TCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
genomic: TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAGgtaagtaatt ... cacgagacagTCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
EST: gi|110723186|gb|EE100208.1|EE100208
EST:     TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACCTTCAG                         TCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
genomic: TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAGgtaagtaatt ... cacgagacagTCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
EST: gi|110720973|gb|EE097443.1|EE097443
EST:     TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACCTTCAG                         TCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
genomic: TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAGgtaagtaatt ... cacgagacagTCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
EST: gi|351015715|gb|FQ431670.1|FQ431670
EST:     TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAG                         TCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
genomic: TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAGgtaagtaatt ... cacgagacagTCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
EST: gi|161710621|gb|FC058154.1|FC058154
EST:     TCAATACTCATTCTCCCTCACCACTTTCAG                         TCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
genomic: TCAATACTCATTCTCCCTCACCACTTTCAGgtaagtaatt ... cacgagacagTCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
EST: gi|351034033|gb|FQ447950.1|FQ447950
EST:     TAGACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAG                         TCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
genomic: TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAGgtaagtaatt ... cacgagacagTCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
EST: gi|349823750|gb|FQ415161.1|FQ415161
EST:     TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAG                         TCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
genomic: TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAGgtaagtaatt ... cacgagacagTCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
EST: gi|349833047|gb|FQ416425.1|FQ416425
EST:     TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAG                         TCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
genomic: TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAGgtaagtaatt ... cacgagacagTCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
EST: gi|161716863|gb|FC064966.1|FC064966
EST:     TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACCTTCAG                         TCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
genomic: TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAGgtaagtaatt ... cacgagacagTCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
EST: gi|349829045|gb|FQ419577.1|FQ419577
EST:     TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAG                         TCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
genomic: TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAGgtaagtaatt ... cacgagacagTCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
EST: gi|349813035|gb|FQ411275.1|FQ411275
EST:     TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAG                         TCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
genomic: TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAGgtaagtaatt ... cacgagacagTCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
EST: gi|351023525|gb|FQ432908.1|FQ432908
EST:     TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAG                         TCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
genomic: TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAGgtaagtaatt ... cacgagacagTCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
EST: gi|349810102|gb|FQ401548.1|FQ401548
EST:     TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAG                         TCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
genomic: TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAGgtaagtaatt ... cacgagacagTCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
EST: gi|351019336|gb|FQ429496.1|FQ429496
EST:     TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAG                         TCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
genomic: TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAGgtaagtaatt ... cacgagacagTCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
EST: gi|349830442|gb|FQ416740.1|FQ416740
EST:     TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAG                         TCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
genomic: TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAGgtaagtaatt ... cacgagacagTCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
EST: gi|351042546|gb|FQ431144.1|FQ431144
EST:     TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAG                         TCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
genomic: TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAGgtaagtaatt ... cacgagacagTCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
EST: gi|30254545|gb|CB971290.1|CB971290
EST:     TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAG                         TCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
genomic: TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAGgtaagtaatt ... cacgagacagTCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
EST: gi|351024968|gb|FQ433385.1|FQ433385
EST:     TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAG                         TCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
genomic: TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAGgtaagtaatt ... cacgagacagTCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
EST: gi|351018781|gb|FQ425683.1|FQ425683
EST:     TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAG                         TCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
genomic: TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAGgtaagtaatt ... cacgagacagTCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
EST: gi|349822557|gb|FQ412832.1|FQ412832
EST:     T--------ATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAG                         TCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
genomic: TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAGgtaagtaatt ... cacgagacagTCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
EST: gi|351030830|gb|FQ438866.1|FQ438866
EST:     TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAG                         TCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
genomic: TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAGgtaagtaatt ... cacgagacagTCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
EST: gi|351029695|gb|FQ427535.1|FQ427535
EST:     TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAG                         TCCTTCGGGAAAGCTTGTTCGGATCGAGCATGCATTGACCGCCGTTGGCTC
genomic: TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAGgtaagtaatt ... cacgagacagTCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
EST: gi|351014327|gb|FQ437329.1|FQ437329
EST:     TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAG                         TCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
genomic: TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAGgtaagtaatt ... cacgagacagTCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
EST: gi|349820335|gb|FQ403951.1|FQ403951
EST:     TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAG                         TCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
genomic: TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAGgtaagtaatt ... cacgagacagTCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
EST: gi|27581848|gb|CB004543.1|CB004543
EST:     TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAG                         TCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
genomic: TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAGgtaagtaatt ... cacgagacagTCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
EST: gi|349830137|gb|FQ420397.1|FQ420397
EST:     TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAG                         TCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
genomic: TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAGgtaagtaatt ... cacgagacagTCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
EST: gi|349825798|gb|FQ423093.1|FQ423093
EST:     TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAG                         TCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
genomic: TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAGgtaagtaatt ... cacgagacagTCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
EST: gi|351027537|gb|FQ446700.1|FQ446700
EST:     TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAG                         TCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
genomic: TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAGgtaagtaatt ... cacgagacagTCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
EST: gi|110694632|gb|EE071906.1|EE071906
EST:     TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAG                         TCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
genomic: TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAGgtaagtaatt ... cacgagacagTCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
EST: gi|351019358|gb|FQ429520.1|FQ429520
EST:     TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAG                         TCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
genomic: TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAGgtaagtaatt ... cacgagacagTCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
EST: gi|351042920|gb|FQ451214.1|FQ451214
EST:     TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAG                         TCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
genomic: TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAGgtaagtaatt ... cacgagacagTCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
EST: gi|351023803|gb|FQ448354.1|FQ448354
EST:     TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAG                         TCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
genomic: TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAGgtaagtaatt ... cacgagacagTCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
EST: gi|351019037|gb|FQ426536.1|FQ426536
EST:     TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAG                         TCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
genomic: TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAGgtaagtaatt ... cacgagacagTCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
EST: gi|110730033|gb|EE106653.1|EE106653
EST:     TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACCTTCAG                         TCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
genomic: TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAGgtaagtaatt ... cacgagacagTCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
EST: gi|349825869|gb|FQ423164.1|FQ423164
EST:     TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAG                         TCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
genomic: TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAGgtaagtaatt ... cacgagacagTCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
EST: gi|351022594|gb|FQ447116.1|FQ447116
EST:     TAAACAAGCATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAG                         TCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
genomic: TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAGgtaagtaatt ... cacgagacagTCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
EST: gi|110688210|gb|EE066498.1|EE066498
EST:     CATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAG                         TCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
genomic: CATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAGgtaagtaatt ... cacgagacagTCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
EST: gi|349819242|gb|FQ412136.1|FQ412136
EST:     TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAG                         TCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
genomic: TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAGgtaagtaatt ... cacgagacagTCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
EST: gi|351029919|gb|FQ427759.1|FQ427759
EST:     TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAG                         TCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
genomic: TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAGgtaagtaatt ... cacgagacagTCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
EST: gi|351031360|gb|FQ445385.1|FQ445385
EST:     TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAG                         TCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
genomic: TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAGgtaagtaatt ... cacgagacagTCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
EST: gi|351029955|gb|FQ430697.1|FQ430697
EST:     TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAG                         TCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
genomic: TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAGgtaagtaatt ... cacgagacagTCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
EST: gi|351016627|gb|FQ424054.1|FQ424054
EST:     TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAG                         TCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
genomic: TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAGgtaagtaatt ... cacgagacagTCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
EST: gi|351013410|gb|FQ425441.1|FQ425441
EST:     TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAG                         TCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
genomic: TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAGgtaagtaatt ... cacgagacagTCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
EST: gi|349818674|gb|FQ403508.1|FQ403508
EST:     TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAG                         TCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
genomic: TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAGgtaagtaatt ... cacgagacagTCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
EST: gi|351040402|gb|FQ434535.1|FQ434535
EST:     TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAG                         TCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
genomic: TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAGgtaagtaatt ... cacgagacagTCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
EST: gi|349826813|gb|FQ418904.1|FQ418904
EST:     TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAG                         TCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
genomic: TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAGgtaagtaatt ... cacgagacagTCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
EST: gi|351030254|gb|FQ432192.1|FQ432192
EST:     TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAG                         TCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
genomic: TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAGgtaagtaatt ... cacgagacagTCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
EST: gi|110422225|gb|EC988540.1|EC988540
EST:     TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAG                         TCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
genomic: TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAGgtaagtaatt ... cacgagacagTCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
EST: gi|351016774|gb|FQ424201.1|FQ424201
EST:     TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAG                         TCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
genomic: TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAGgtaagtaatt ... cacgagacagTCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
EST: gi|351015657|gb|FQ427142.1|FQ427142
EST:     TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAG                         TCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC
genomic: TAAACAAACATGGGAGACAGTCAATACTCATTCTCCCTCACCACTTTCAGgtaagtaatt ... cacgagacagTCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgcagagactcatattttcgatcttctcacatctctatgtgtgtcacgagacagTCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTCAGGCCAAACATCTCTAGGGATCAAAG
                        ttctcac  putative branch site (score: 2)
          tcatatttt  TA-rich tract