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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tataattaatgattattggtcaattcgaatttaattatttctatgattttgttttgtaaagcgtgatttggtttaaataagtgtgctgttttttccgcagAGTTTAGATCTTTCAAGGGTAGATCGGATCATTCGGTGTTCACTTCGATCTCAAG

Basic information

species Vitis vinifera
transcript Vv01s0011g01420.t01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110690672|gb|EE068034.1|EE068034
EST:     GGGACGAGCTTTCGGCAGAGGAGCGAGACCTTCTCGTCAAGGACATCGAG                         AGTTTAGATCTTTCAAGGATAGATCGGATCATTCGGTGTTCACTTCGATCT
genomic: GGGACGAGCTTTCGGCAGAGGAGCGAGACCTTCTCGTCAAGGACATCGAGgtcgttctct ... ttttccgcagAGTTTAGATCTTTCAAGGGTAGATCGGATCATTCGGTGTTCACTTCGATCT
EST: gi|110401181|gb|EC967782.1|EC967782
EST:     GGGACGAGCTTTCGGCAGAGGAGCGAGACCTTCTCGTCAAGGACATCGAG                         AGTTTAGATCTTTCAAGGATAGATCGGATCATTCGGTGTTCACTTCGATCT
genomic: GGGACGAGCTTTCGGCAGAGGAGCGAGACCTTCTCGTCAAGGACATCGAGgtcgttctct ... ttttccgcagAGTTTAGATCTTTCAAGGGTAGATCGGATCATTCGGTGTTCACTTCGATCT
EST: gi|110728445|gb|EE104021.1|EE104021
EST:     GGGACGAGCTTTCGGCAGAGGAGCGAGACCTTCTCGTCAAGGACATCGAG                         AGTTTAGATCTTTCAAGGATAGATCGGATCATTCGGTGTTCACTTCGATCT
genomic: GGGACGAGCTTTCGGCAGAGGAGCGAGACCTTCTCGTCAAGGACATCGAGgtcgttctct ... ttttccgcagAGTTTAGATCTTTCAAGGGTAGATCGGATCATTCGGTGTTCACTTCGATCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attttgttttgtaaagcgtgatttggtttaaataagtgtgctgttttttccgcagAGTTTAGATCTTTCAAGGGTAGATCGGATCATTCGGTGTTCACTTCGATCTCAAG
                                        ctgttttttcc  CT-rich tract
                    atttggtttaaataa  TA-rich tract