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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcttcttgatatgattttcagatcaacgattgatccgttcaattctcgttttcctctatcgattgatccctcttttactttctgccgttgactttacctcatctgggttagGGTTTCGAATCTCCGTTCCCAATCCTTAGATCGCCTTGATCCGTGGTGTATTTGGCATCGAATTTCATTATATTTTGTTACCCTCTCCTATTTGGTTCAA

Basic information

species Vitis vinifera
transcript Vv01s0011g00700.t01
intron # 1
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatcgattgatccctcttttactttctgccgttgactttacctcatctgggttagGGTTTCGAATCTCCGTTCCCAATCCTTAGATCGCCTTGATCCGTGGTGTATTTGGCATCGAATTTCATTATATTTTGTTACCCTCTCCTATTTGGTTCAA
                             cgttgac  putative branch site (score: 4)
                                        cctcatct  putative PPT
                ttttacttt  TA-rich tract