1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ttgcatcaagttgactcaacataaatacacagtttgatgttcaagcatacttatttttccacttctttgtctctctgctttttgcctacgggtactgcagCTTAGCTCCTCTAACAGTTGTATCATGAGCAGTTGCGTGAAGCCATTATCACCAAGCAAGACAAGTCCAGTGGTTCTCCTCCATGGTTTTGACAG
species | Vitis vinifera |
transcript | Vv01s0011g00550.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACCCATTTGCTCGAAAGCTAGCGACAAGGATCGAGAGACTACCTGTGCAG CTTAGCTCCTCTAACAGTTGTATCATGAGCAGTTGCGTGAAGCCATTATCAEST: gi|110430267|gb|EC996810.1|EC996810
genomic: ACCCATTTGCTCGAAAGCTAGCGACAAGGATCGAGAGACTACCTGTGCAGgtaaaatcaa ... ggtactgcagCTTAGCTCCTCTAACAGTTGTATCATGAGCAGTTGCGTGAAGCCATTATCA
EST: ACCCATTTGCCCGAAAGCTAGCGACAAGGATCGAGAGACTGCCTGTGCAG CTTAGCTCCTCTAACAGTTGTATCATGAGCAGTTGCGTGAAGCCATTATCAEST: gi|349808731|gb|FQ406581.1|FQ406581
genomic: ACCCATTTGCTCGAAAGCTAGCGACAAGGATCGAGAGACTACCTGTGCAGgtaaaatcaa ... ggtactgcagCTTAGCTCCTCTAACAGTTGTATCATGAGCAGTTGCGTGAAGCCATTATCA
EST: ACCCATTTGCTCGAAAGCTAGCGACAAGGATCGAGAGACTACCTGTGCAG CTTAGCTCCTCTAACAGTTGTATCATGAGCAGTTGCGTGAAGCCATTATCAEST: gi|352786080|gb|FQ481875.1|FQ481875
genomic: ACCCATTTGCTCGAAAGCTAGCGACAAGGATCGAGAGACTACCTGTGCAGgtaaaatcaa ... ggtactgcagCTTAGCTCCTCTAACAGTTGTATCATGAGCAGTTGCGTGAAGCCATTATCA
EST: ACCCATTTGCTCGAAAGCTAGCGACAAGGATCGAGAGACTACCTGTGCAG CTTAGCTCCTCCAACAGTTGTATCATGAGCAGTTGCGTGAAGCCATTATCAEST: gi|351042817|gb|FQ434379.1|FQ434379
genomic: ACCCATTTGCTCGAAAGCTAGCGACAAGGATCGAGAGACTACCTGTGCAGgtaaaatcaa ... ggtactgcagCTTAGCTCCTCTAACAGTTGTATCATGAGCAGTTGCGTGAAGCCATTATCA
EST: ACCCATTTGCTCGAAAGCTAGCGACAAGGATCGAGAGACTACCTGTGCAG CTTAGCTCCTCTAACAGTTGTATCATGAGCAGTTGCGTGAAGCCATTATCAEST: gi|351054615|gb|FQ456812.1|FQ456812
genomic: ACCCATTTGCTCGAAAGCTAGCGACAAGGATCGAGAGACTACCTGTGCAGgtaaaatcaa ... ggtactgcagCTTAGCTCCTCTAACAGTTGTATCATGAGCAGTTGCGTGAAGCCATTATCA
EST: ACCCATTTGCTCGAAAGCTAGCGACAAGGATCGAGAGACTACCTGTGCAG CTTAGCTCCTCTAACAGTTGTATCATGAGCAGTTGCGTGAAGCCATTATCAEST: gi|349829486|gb|FQ420018.1|FQ420018
genomic: ACCCATTTGCTCGAAAGCTAGCGACAAGGATCGAGAGACTACCTGTGCAGgtaaaatcaa ... ggtactgcagCTTAGCTCCTCTAACAGTTGTATCATGAGCAGTTGCGTGAAGCCATTATCA
EST: ACCCATTTGCTCGAAAGCTAGCGACAAGGATCGAGAGACTACCTGTGCAG CTTAGCTCCTCTAACAGTTGTATCATGAGCAGTTGCGTGAAGCCATTATCAEST: gi|349830592|gb|FQ416890.1|FQ416890
genomic: ACCCATTTGCTCGAAAGCTAGCGACAAGGATCGAGAGACTACCTGTGCAGgtaaaatcaa ... ggtactgcagCTTAGCTCCTCTAACAGTTGTATCATGAGCAGTTGCGTGAAGCCATTATCA
EST: ACCCATTTGCTCGAAAGCTAGCGACAAGGATCGAGAGACTACCTGTGCAG CTTAGCTCCTCTAACAGTTGTATCATGAGCAGTTGCGTGAAGCCATTATCA
genomic: ACCCATTTGCTCGAAAGCTAGCGACAAGGATCGAGAGACTACCTGTGCAGgtaaaatcaa ... ggtactgcagCTTAGCTCCTCTAACAGTTGTATCATGAGCAGTTGCGTGAAGCCATTATCA
catacttatttttccacttctttgtctctctgctttttgcctacgggtactgcagCTTAGCTCCTCTAACAGTTGTATCATGAGCAGTTGCGTGAAGCCATTATCACCAAGCAAGACAAGTCCAGTGGTTCTCCTCCATGGTTTTGACAG
ttattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgcatcaagttgactcaacataaatacacagtttgatgttcaagcatacttatttttccacttctttgtctctctgctttttgcctacgggtactgcagCTTAGCTCCTCTAACAGTTGTATCATGAGCAGTTGCGTGAAGCCATTATCACCAAGCAAGACAAGTCCAGTGGTTCTCCTCCATGGTTTTGACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- gcatcaa
- - - - - - - - - acataaa
- - - - - - - - - - - - - - - - - - - - tcaagca