Sequence
atgc intronic sequence ATGC exonic sequence...aaaggctgaaaaacaagtccaattaagtactaccttgtcttgtagatttgagatccaaagatttggtgtgacaatagtaatttaagctcatgttctgcagAAGCTATTATCGGTGTACACACCAAGGGTGCAATGTGAAGAAGCAGGTTCAACGCCTATCAAAAGACGAAGGAATCGTGGTCACAACTTATGAAGGCATG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0010g03930.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: LOC_Os11g29870.1 (Oryza sativa), 3'ss of exon 1
aaaggctgaaaaacaagtccaattaagtactaccttgtcttgtagatttgagatccaaagatttggtgtgacaatagtaatttaagctcatgttc-tgcagAAGCTATTATCGGTGTACACACCAAGGGTGCAATGTGAAGAAGCAGGTTCAACGCCTATCAAAAGACGAAGGAATCGTGGTCACAACTTATGAAGGCATG
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-agtaatgaaaaaaaatatttgctgtctaatttctttctcgatgaatttgtatttcatcggtgcacgaatctaaaattaatgaatgaatgaatggatgcagGAGCTACTACCGGTGCACGCACCAAGGGTGCAACGTGAAGAAGCAGGTGCAGCGGCTGTCGCGGGACGAGACGGTGGTGGTGACGACGTACGAGGGCACG
upper sequence: Vv01s0010g03930.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GRMZM2G106560_T01 (Zea mays), 3'ss of exon 1
aaaggctgaaaaacaagtccaattaagtactaccttgtcttgtagatttgagatccaaagatttggtgtgac--aatagtaatttaagctcatgttc-tgcagAAGCTATTATCGGTGTACACACCAAGGGTGCAATGTGAAGAAGCAGGTTCAACGCCTATCAAAAGACGAAGGAATCGTGGTCACAACTTATGAAGGCATG
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---catggatatacatgcattcatatatatctcctcgtttttgctactagctagctagtttcttgattgaacttactcttttttcgcacgcatgtggatgcagAAGCTACTACAGATGCACACACCAAGGGTGCAACGTGAAGAAGCAGGTGCAGCGGCTGTCAAGGGACGAGGGCGTGGTGGTGACCACATACGAGGGCACC
upper sequence: Vv01s0010g03930.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GRMZM2G054125_T01 (Zea mays), 3'ss of exon 1
-aaaggctgaaaaacaagtccaattaagtactaccttgtcttgtagatttgagatccaaagatttggtgtgacaatagtaattt-aagctcatgttc-tgcagAAGCTATTATCGGTGTACACACCAAGGGTGCAATGTGAAGAAGCAGGTTCAACGCCTATCAAAAGACGAAGGAATCGTGGTCACAACTTATGAAGGCATG
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tatatctctttctgcacgttttttcactt--cgttttgttat-cactttcctgattcatgcacccagaatgaactcattcttttcgcacgcatgtggatgcagAAGCTACTACAGATGCACTCACCAAGGGTGCAACGTGAAGAAGCAGGTGCAGCGGCTGTCAAGGGATGAGGGCGTGGTGGTGACCACATACGAGGGCACCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110401196|gb|EC967798.1|EC967798EST: AGATGGAGGAAGTATGGGCAAAAAGCTGTCAAAAACAACAGGTTCCCAAG AAGCTATTATCGGTGTACACACCAAGGGTGCAATGTGAAGAAGCAGGTTCA
genomic: AGATGGAGGAAGTATGGGCAAAAAGCTGTCAAAAACAACAGGTTCCCAAGgtattttact ... tgttctgcagAAGCTATTATCGGTGTACACACCAAGGGTGCAATGTGAAGAAGCAGGTTCA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atttgagatccaaagatttggtgtgacaatagtaatttaagctcatgttctgcagAAGCTATTATCGGTGTACACACCAAGGGTGCAATGTGAAGAAGCAGGTTCAACGCCTATCAAAAGACGAAGGAATCGTGGTCACAACTTATGAAGGCATG
acaatagtaatttaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aaaggctgaaaaacaagtccaattaagtactaccttgtcttgtagatttgagatccaaagatttggtgtgacaatagtaatttaagctcatgttctgcagAAGCTATTATCGGTGTACACACCAAGGGTGCAATGTGAAGAAGCAGGTTCAACGCCTATCAAAAGACGAAGGAATCGTGGTCACAACTTATGAAGGCATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - -aaaacaa
- - - - - - - - - - - - - - - - - -tgtcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - atccaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggtgtg