Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaagttgctttcgatttttcaattttttttttcgatttttaaatttttttttgagacttgatgaatcgagtattgcagTTCCAAGGCGAGCACAAGGAGAGCTTGTATTGGGGAACATATCGCCCTCAGGTTTATCTTGGAATTCGTGCCAG

Basic information

species Vitis vinifera
transcript Vv01s0010g03300.t01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0010g03300.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: LOC_Os01g69210.2 (Oryza sativa), 3'ss of exon 2
---------------------------------------------------------------------------------------------------------------------------gtaaagttgctttcgatttttcaattttttttttcgatttttaaatttttttttgagacttgatgaatcgagtatt-gcagTTCCAAGGCGAGCACAAGGAGAGCTTGTATTGGGGAACATATCGCCCTCAGGTTTATCTTGGAATTCGTGCCAG
                                                                                                                            | | |||  |    | | || | |||   |  |  | || |   |   ||| |||    | || | | || | ||  ||||||||||| || |||||||| |||||||||||||| || ||  | ||  | || ||||||||||||||||| ||
gtaaaatgaatatgaattgtgcatagccgcaaatgtcatctgagctaggacagacgacctaaaatgtaccagtttctgttaaatatcctcctgtaagctagttctgattgatttatacgtaacatcatgttattccatactgttgagtttggatggt--aattatggttagctttctgatggctcat-agTTGACTGTTTACAGTTCCAAGGAGATCACAAGGAAAGCTTGTATTGGGGTACCTACAGGCCGAATGTATATCTTGGAATTCGTGCAAG

upper sequence: Vv01s0010g03300.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: LOC_Os01g69210.1 (Oryza sativa), 3'ss of exon 1
----------------------gtaaagttgctttcgatttttcaattttttttttcgatttttaaatttttttttgagacttgatgaatcgagtatt-gcagTTCCAAGGCGAGCACAAGGAGAGCTTGTATTGGGGAACATATCGCCCTCAGGTTTATCTTGGAATTCGTGCCAG
                       | | |||  |    | | || | |||   |  |  | || |   |   ||| |||    | || | | || | ||  ||||||||||| || |||||||| |||||||||||||| || ||  | ||  | || ||||||||||||||||| ||
ttctgattgatttatacgtaacatcatgttattccatactgttgagtttggatggt--aattatggttagctttctgatggctcat-agttgactgtttacagTTCCAAGGAGATCACAAGGAAAGCTTGTATTGGGGTACCTACAGGCCGAATGTATATCTTGGAATTCGTGCAAG

upper sequence: Vv01s0010g03300.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA05G27890.1 (Glycine max), 3'ss of exon 1
--gtaaagttgctttcgatttttcaatttttt--ttttcgatttttaaatttttttttgagacttgatgaatcgag-----------------tattgcagTTCCAAGGCGAGCACAAGGAGAGCTTGTATTGGGGAACATATCGCCCTCAGGTTTATCTTGGAATTCGTGCCAG
   |    ||||| |   |||||   | | |   ||||||||  || |||  ||||     || ||| |||   ||                 | ||||||||  |||| |||||||| ||||| |||||||||||||| ||||| |||||||| ||||||||||||||||||||
gtattccattgctgttattttttttttctgtccattttcgataatttaatgattttggcgtacgtgaagaaagaagaatgacttggttggcgttgttgcagTTTGAAGGTGAGCACAAAGAGAGTTTGTATTGGGGAACTTATCGTCCTCAGGTCTATCTTGGAATTCGTGCCAG

upper sequence: Vv01s0010g03300.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA08G10870.1 (Glycine max), 3'ss of exon 1
gtaaagtt---gctttcgatttttcaattttttttttcgatttttaaatttttttttgagacttga-tgaatcgag------tattgcagTTCCAAGGCGAGCACAAGGAGAGCTTGTATTGGGGAACATATCGCCCTCAGGTTTATCTTGGAATTCGTGCCAG
|| || ||    ||| |    |||  |||||  |||| ||    |  ||  ||    || |   || ||| | |        | ||||||||  |||| |||||||||||||| |||||||||||||| ||||| ||||| || ||||| |||||||| |||||
gtcaactttcaacttactccatttttattttcatttttgagaactcgatgattcaaagaaagaagaatgacttggttggcgttgttgcagTTTGAAGGTGAGCACAAGGAGAGTTTGTATTGGGGAACTTATCGTCCTCACGTGTATCTCGGAATTCGCGCCAG

upper sequence: Vv01s0010g03300.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA05G27900.2 (Glycine max), 3'ss of exon 1
gtaaagttgctttcgatttttcaattttttttttcgatttttaaatttt-------------tttttgagacttgatgaatcgag---------------------tattgcagTTCCAAGGCGAGCACAAGGAGAGCTTGTATTGGGGAACATATCGCCCTCAGGTTTATCTTGGAATTCGTGCCAG
         ||||| | |||     ||||||||||  |||| | | ||              |   |||     || |||   |                      | ||||||||  |||| |||||||||||||| |||||||||||||| ||||| ||||| || ||||| |||||||| |||||
----gtcaactttcaactttctccatttttttttcagttttgagaattcgaccatactagcgtgcgtgaaggaagaagaaagaaagaagaatgacttggttggtgctgttgcagTTTGAAGGTGAGCACAAGGAGAGTTTGTATTGGGGAACTTATCGTCCTCACGTGTATCTCGGAATTCGCGCCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttttttcgatttttaaatttttttttgagacttgatgaatcgagtattgcagTTCCAAGGCGAGCACAAGGAGAGCTTGTATTGGGGAACATATCGCCCTCAGGTTTATCTTGGAATTCGTGCCAG
                                acttgat  putative branch site (score: 5)
     ttttcgatttttaaat  TA-rich tract