1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...aactatatgggaacacaatcttgcacaattgtagcatgaaaaattatttggattgaattaatattcactaattttttaggggtttcttctctttgtctagGCTATAAGCATGAAGCTTGACACTAGTGGTCTTGAGTCAACTGTACCGCTCTTCGGGGCTAATAGCGAGCTTCTTGGTGGGTTTTCAGCTGCTCCTTCAT
species | Vitis vinifera |
transcript | Vv01s0010g02900.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AAACGCTGCGTTTCGATCGATCTGTGAGTTCTAG GCTATAAGCATGAAGCTTGACACTAGTGGTCTTGAGTCAACTGTACCGCTCEST: gi|110697158|gb|EE073899.1|EE073899
genomic: AAACGCTGCGTTTCGATCGATCTGTGAGTTCTAGgtactcctct ... ctttgtctagGCTATAAGCATGAAGCTTGACACTAGTGGTCTTGAGTCAACTGTACCGCTC
EST: CGATCTTTGAGTTCTAG GCTATAAGCATGAAGCTTGACACTAGTGGTCTTGAGTCAACTGTACCGCTCEST: gi|71856922|gb|DT005977.1|DT005977
genomic: CGATCTGTGAGTTCTAGgtactcctct ... ctttgtctagGCTATAAGCATGAAGCTTGACACTAGTGGTCTTGAGTCAACTGTACCGCTC
EST: CAGTTCTTCTCCAAGCGCTGCGTTTCGATCGATCTTTGAGTTCTAG GCTATAAGCATGAAGCTTGACACTAGTGGTCTTGAGTCAACTGTACCGCTCEST: gi|71862964|gb|DT012019.1|DT012019
genomic: CAGTTCTTCTCCAAACGCTGCGTTTCGATCGATCTGTGAGTTCTAGgtactcctct ... ctttgtctagGCTATAAGCATGAAGCTTGACACTAGTGGTCTTGAGTCAACTGTACCGCTC
EST: CAGTTCTTCTCCAAGCGCTGCGTTTCGATCGATCTTTGAGTTCTAG GCTATAAGCATGAAGCTTGACACTAGTGGTCTTGAGTCAACTGTACCGCTCEST: gi|110687524|gb|EE065028.1|EE065028
genomic: CAGTTCTTCTCCAAACGCTGCGTTTCGATCGATCTGTGAGTTCTAGgtactcctct ... ctttgtctagGCTATAAGCATGAAGCTTGACACTAGTGGTCTTGAGTCAACTGTACCGCTC
EST: CAGTTCTTCTCCAAGCGCTGCGTTTCGATCGATCTTTGAGTTCTAG GCTATAAGCATGAAGCTTGACACTAGTGGTCTTGAGTCAACTGTACCGCTCEST: gi|156735848|gb|EV239969.1|EV239969
genomic: CAGTTCTTCTCCAAACGCTGCGTTTCGATCGATCTGTGAGTTCTAGgtactcctct ... ctttgtctagGCTATAAGCATGAAGCTTGACACTAGTGGTCTTGAGTCAACTGTACCGCTC
EST: GTTCTTCTCCAAACGCTGCGTTTCGATCGATCTGTCATTTCTAG GCTATAAGCATGAAGCTTGACACTAGTGGTCTTGAGTCAACTGTACCGCTCEST: gi|294966461|gb|GW839568.1|GW839568
genomic: GTTCTTCTCCAAACGCTGCGTTTCGATCGATCTGTGAGTTCTAGgtactcctct ... ctttgtctagGCTATAAGCATGAAGCTTGACACTAGTGGTCTTGAGTCAACTGTACCGCTC
EST: CAGTTCTTCTCCAAACGCTGCGTTTCGATCGATCTTTGAGTTCTAG GCTATAAGCATGAAGCTTGACACTAGTGGTCTTGAGTCAACTGTACCGCTCEST: gi|110698339|gb|EE075751.1|EE075751
genomic: CAGTTCTTCTCCAAACGCTGCGTTTCGATCGATCTGTGAGTTCTAGgtactcctct ... ctttgtctagGCTATAAGCATGAAGCTTGACACTAGTGGTCTTGAGTCAACTGTACCGCTC
EST: CGCTGCGTTTCGATCGATCTTTGAGTTCTAG GCTATAAGCATGAAGCTTGACACTAGTGCCCTTGAGTCAACTGTACCGCTCEST: gi|71864543|gb|DT013598.1|DT013598
genomic: CGCTGCGTTTCGATCGATCTGTGAGTTCTAGgtactcctct ... ctttgtctagGCTATAAGCATGAAGCTTGACACTAGTGGTCTTGAGTCAACTGTACCGCTC
EST: CAGTTCTTCTCCAAGCGCTGCGTTTCGATCGATCTTTGAGTTCTAG GCTATAAGCATGAAGCTTGACACTAGTGGTCTTGAGTCAACTGTACCGCTCEST: gi|71871573|gb|DT020628.1|DT020628
genomic: CAGTTCTTCTCCAAACGCTGCGTTTCGATCGATCTGTGAGTTCTAGgtactcctct ... ctttgtctagGCTATAAGCATGAAGCTTGACACTAGTGGTCTTGAGTCAACTGTACCGCTC
EST: CGCTGCGTTTCGATCGATCTTTGAGTTCTAG GCTATAAGCATGAAGCTTGACACTAGTGGTCTTGAGTCAACTGTACCGCTCEST: gi|110723155|gb|EE100145.1|EE100145
genomic: CGCTGCGTTTCGATCGATCTGTGAGTTCTAGgtactcctct ... ctttgtctagGCTATAAGCATGAAGCTTGACACTAGTGGTCTTGAGTCAACTGTACCGCTC
EST: CAGTTCTTCTCCAAACGCTGCGTTTCGATCGATCTGTGAGTTCTAG GCTATAAGCATGAAGCTTGACACTAGTGGTCTTGAGTCAACTGTACCGCTCEST: gi|71857078|gb|DT006133.1|DT006133
genomic: CAGTTCTTCTCCAAACGCTGCGTTTCGATCGATCTGTGAGTTCTAGgtactcctct ... ctttgtctagGCTATAAGCATGAAGCTTGACACTAGTGGTCTTGAGTCAACTGTACCGCTC
EST: CAGTTCTTCTCCAAGCGCTGCGTTTCGATCGATCTTTGAGTTCTAG GCTATAAGCATGAAGCTTGACACTAGTGGTCTTGAGTCAACTGTACCGCTCEST: gi|110727856|gb|EE105095.1|EE105095
genomic: CAGTTCTTCTCCAAACGCTGCGTTTCGATCGATCTGTGAGTTCTAGgtactcctct ... ctttgtctagGCTATAAGCATGAAGCTTGACACTAGTGGTCTTGAGTCAACTGTACCGCTC
EST: CAGTTCTTCTCCAAACGCTGCGTTTCGATCGATCTGTGAGTTCTAG GCTATAAGCATGAAGCTTGACACTAGTGGTCTTGAGTCAACTGTACCGCTCEST: gi|110733141|gb|EE109075.1|EE109075
genomic: CAGTTCTTCTCCAAACGCTGCGTTTCGATCGATCTGTGAGTTCTAGgtactcctct ... ctttgtctagGCTATAAGCATGAAGCTTGACACTAGTGGTCTTGAGTCAACTGTACCGCTC
EST: CTTCTCCAAGCGCTGCGTTTCGATCGATCTTTGAGTTCTAG GCTATAAGCATGAAGCTTGACACTAGTGGTCTTGAGTCAACTGTACCGCTCEST: gi|71856981|gb|DT006036.1|DT006036
genomic: CTTCTCCAAACGCTGCGTTTCGATCGATCTGTGAGTTCTAGgtactcctct ... ctttgtctagGCTATAAGCATGAAGCTTGACACTAGTGGTCTTGAGTCAACTGTACCGCTC
EST: CAGTTCTTCTCCAAGCGCTGCGTTTCGATCGATCTTTGAGTTCTAG GCTATAAGCATGAAGCTTGACACTAGTGGTCTTGAGTCAACTGTACCGCTCEST: gi|37184921|gb|CF604274.1|CF604274
genomic: CAGTTCTTCTCCAAACGCTGCGTTTCGATCGATCTGTGAGTTCTAGgtactcctct ... ctttgtctagGCTATAAGCATGAAGCTTGACACTAGTGGTCTTGAGTCAACTGTACCGCTC
EST: CAGTTCTTCTCCAAACGCTGCGTTTCGATCGATCTTTGAGTTCTAG GCTATAAGCATGAAGCTTGACACTAGTGGTCTTGAGTCAACTGTACCGCTCEST: gi|71862057|gb|DT011112.1|DT011112
genomic: CAGTTCTTCTCCAAACGCTGCGTTTCGATCGATCTGTGAGTTCTAGgtactcctct ... ctttgtctagGCTATAAGCATGAAGCTTGACACTAGTGGTCTTGAGTCAACTGTACCGCTC
EST: CAGTTCTTCTCCAAGCGCTGCGTTTCGATCGATCTTTGAGTTCTAG GCTATAAGCATGAAGCTTGACACTAGTGGTCTTGAGTCAACTGTACCGCTCEST: gi|110367168|gb|EC931094.1|EC931094
genomic: CAGTTCTTCTCCAAACGCTGCGTTTCGATCGATCTGTGAGTTCTAGgtactcctct ... ctttgtctagGCTATAAGCATGAAGCTTGACACTAGTGGTCTTGAGTCAACTGTACCGCTC
EST: TTCGATCGATCTTTGAGTTCTAG GCTATAAGCATGAAGCTTGACACTAGTGGTCTTGAGTCAACTGTACCGCTCEST: gi|351033347|gb|FQ446579.1|FQ446579
genomic: TTCGATCGATCTGTGAGTTCTAGgtactcctct ... ctttgtctagGCTATAAGCATGAAGCTTGACACTAGTGGTCTTGAGTCAACTGTACCGCTC
EST: CAGTTCTTCTCCAAACGCTGCGTTTCGATCGATCTTTGAGTTCTAG GCTATAAGCATGAAGCTTGACACTAGTGGTCTTGAGTCAACTGTACCGCTCEST: gi|110397717|gb|EC963560.1|EC963560
genomic: CAGTTCTTCTCCAAACGCTGCGTTTCGATCGATCTGTGAGTTCTAGgtactcctct ... ctttgtctagGCTATAAGCATGAAGCTTGACACTAGTGGTCTTGAGTCAACTGTACCGCTC
EST: TTCGATCGATCTTTGAGTTCTAG GCTATAAGCATGAAGCTTGACACTAGTGGTCTTGAGTCAACTGTACCGCTCEST: gi|110372494|gb|EC936666.1|EC936666
genomic: TTCGATCGATCTGTGAGTTCTAGgtactcctct ... ctttgtctagGCTATAAGCATGAAGCTTGACACTAGTGGTCTTGAGTCAACTGTACCGCTC
EST: CAGTTCTTCTCCAAGCGCTGCGTTTCGATCGATCTTTGAGTTCTAG GCTATAAGCATGAAGCTTGACACTAGTGGTCTTGAGTCAACTGTACCGCTCEST: gi|161720849|gb|FC069601.1|FC069601
genomic: CAGTTCTTCTCCAAACGCTGCGTTTCGATCGATCTGTGAGTTCTAGgtactcctct ... ctttgtctagGCTATAAGCATGAAGCTTGACACTAGTGGTCTTGAGTCAACTGTACCGCTC
EST: CAGTTCTTCTCCAAGCGCTGCGTTTCGATCGATCTTTGAGTTCTAG GCTATAAGCATGAAGCTTGACACTAGTGGTCTTGAGTCAACTGTACCGCTCEST: gi|110691315|gb|EE069273.1|EE069273
genomic: CAGTTCTTCTCCAAACGCTGCGTTTCGATCGATCTGTGAGTTCTAGgtactcctct ... ctttgtctagGCTATAAGCATGAAGCTTGACACTAGTGGTCTTGAGTCAACTGTACCGCTC
EST: CAGTTCTTCTCCAAACGCTGCGTTTCGATCGATCTTTGAGTTCTAG GCTATAAGCATGAAGCTTGACACTAGTGGTCTTGAGTCAACTGTACCGCTCEST: gi|110732056|gb|EE107008.1|EE107008
genomic: CAGTTCTTCTCCAAACGCTGCGTTTCGATCGATCTGTGAGTTCTAGgtactcctct ... ctttgtctagGCTATAAGCATGAAGCTTGACACTAGTGGTCTTGAGTCAACTGTACCGCTC
EST: ATCGATCTGTGAGTTCTAG GCTATAAGCATGAAGCTTGACACTAGTGGTCTTGAGTCAACTGTACCGCTCEST: gi|110726596|gb|EE102526.1|EE102526
genomic: ATCGATCTGTGAGTTCTAGgtactcctct ... ctttgtctagGCTATAAGCATGAAGCTTGACACTAGTGGTCTTGAGTCAACTGTACCGCTC
EST: CAGTTCTTCTCCAAACGCTGCGTTTCGATCGATCTGTGAGTTCTAG GCTATAAGCATGAAGCTTGACACTAGTGGTCTTGAGTCAACTGTACCGCTCEST: gi|37183791|gb|CF603145.1|CF603145
genomic: CAGTTCTTCTCCAAACGCTGCGTTTCGATCGATCTGTGAGTTCTAGgtactcctct ... ctttgtctagGCTATAAGCATGAAGCTTGACACTAGTGGTCTTGAGTCAACTGTACCGCTC
EST: CAGTTCTTCTCC-AACGCTGCGTTTCGATCGATCTTTGAGTTCTAG GCTATAAGCATGAAGCTTGACACTAGTGGTCTTGAGTCAACTGTACCGCTC
genomic: CAGTTCTTCTCCAAACGCTGCGTTTCGATCGATCTGTGAGTTCTAGgtactcctct ... ctttgtctagGCTATAAGCATGAAGCTTGACACTAGTGGTCTTGAGTCAACTGTACCGCTC
atttggattgaattaatattcactaattttttaggggtttcttctctttgtctagGCTATAAGCATGAAGCTTGACACTAGTGGTCTTGAGTCAACTGTACCGCTCTTCGGGGCTAATAGCGAGCTTCTTGGTGGGTTTTCAGCTGCTCCTTCAT
cactaat putative branch site (score: 2)
tttcttctctttgtct putative PPT
attgaattaatattca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aactatatgggaacacaatcttgcacaattgtagcatgaaaaattatttggattgaattaatattcactaattttttaggggtttcttctctttgtctagGCTATAAGCATGAAGCTTGACACTAGTGGTCTTGAGTCAACTGTACCGCTCTTCGGGGCTAATAGCGAGCTTCTTGGTGGGTTTTCAGCTGCTCCTTCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - gaacaca
- - - - - - - - - -cttgcac
- - - - - - - - - - - - - - -tgtagca
- - - - - - - - - - - - - - - - - - tgaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - tggattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tattcac