Sequence
atgc intronic sequence ATGC exonic sequence...ttggatggaattgatcaatgcaaggcagagatactgttgttattggtgagttgaagtgttggaactgatttttcttcgaatttgggatttcggttttcagGGCTGCTGCAATTCCAAGAGGGAAGGGTGGTGCTCGACTTCAAATGAAATTAGCGTACAATCCCTTGGCGCCAGTCTTTTTGTTTTTGCTCCAGTGGATG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0010g02200.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA05G27640.2 (Glycine max), 3'ss of exon 1
ttggatggaattgatcaatgcaaggcagagatactgttgttattggtgagttgaagtgttggaactgatttttcttcgaat-ttgggatttcggttttcagGGCTGCTGCAATTCCAAGAGGGAAGGGTGGTGCTCGACTTCAAATGAAATTAGCGTACAATCCCTTGGCGCCAGTCTTTTTGTTTTTGCTCCAGTGGATG
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-tgttagggactatgaaatatactatgtgtatggtttttttttttttctttttttgtgttgtgcatcctctgaatttgaatactgggtgtgtgctctctagGGCTGCTGCAATTCCCAGAGCCAAGGGTGGGACTCTTCTCCAAATGAAATTGGTGTACAACCACTTGGCTCCTCTCTTTCTGTTGTTGCTACAGTGGATG
upper sequence: Vv01s0010g02200.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA11G37510.1 (Glycine max), 3'ss of exon 1
-ttggatggaattgatcaatgca--aggcagagatactgttgttattggtgagttgaagtgttggaactgatttttcttcgaatttgggatttcggttttcagGGCTGCTGCAATTCCAAGAGGGAAGGGTGGTGCTCGACTTCAAATGAAATTAGCGTACAATCCCTTGGCGCCAGTCTTTTTGTTTTTGCTCCAGTGGATG
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aataataagaatttgcttatccacctgtgatcaatttgattgtgattttttattttt-gtccccactctgaatttggattgtgtgttgtgccct--cttctagGGCTGCTGCAATTCCCAGAGCCAAGGGTGGAACTCTTCTTCAAATGAAATTGGTTTACAATCACTTGGCTCCTCTCTTCCTGTTATTTCTACAATGGATG
upper sequence: Vv01s0010g02200.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA08G10630.1 (Glycine max), 3'ss of exon 1
-------ttggatggaattgatcaatgcaaggcagagatactgttgttattggtgagttg-aagtgttggaactgatttttcttcgaatttgggatttcggttttcagGGCTGCTGCAATTCCAAGAGGGAAGGGTGGTGCTCGACTTCAAATGAAATTAGCGTACAATCCCTTGGCGCCAGTCTTTTTGTTTTTGCTCCAGTGGATG
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aaattctttgtttgggactatgaaatgtactgtgtgtgtgttttactttcttttgtgttgtgaatctt----ctgaattt----caatactgggtatgtactctctagGGCTGCTGCAATTCCCAGAGCCAAGGGTGGGACTCTTCTCCAAATGAAATTGGTTTACAACCACTTGGCTCCTCTCTTTCTGTTGTTGCTACAGTGGATGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30134955|gb|CB920293.1|CB920293EST: CAAGATTCTATTAAGGTTCTGGAGGCTGATGTACAGCATGCCAATGCTTT GGCTGCTGCAATTCCAAGAGGGAAGGGTGGTGCTCGACTTCAAATGAAATT
genomic: CAAGATTCTATTAAGGTTCTGGAGGCTGATGTACAGCATGCCAATGCTTTgtgagttttc ... cggttttcagGGCTGCTGCAATTCCAAGAGGGAAGGGTGGTGCTCGACTTCAAATGAAATT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtgagttgaagtgttggaactgatttttcttcgaatttgggatttcggttttcagGGCTGCTGCAATTCCAAGAGGGAAGGGTGGTGCTCGACTTCAAATGAAATTAGCGTACAATCCCTTGGCGCCAGTCTTTTTGTTTTTGCTCCAGTGGATG
aactgat putative branch site (score: 3)
ttttc putative PPT
atttttctt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttggatggaattgatcaatgcaaggcagagatactgttgttattggtgagttgaagtgttggaactgatttttcttcgaatttgggatttcggttttcagGGCTGCTGCAATTCCAAGAGGGAAGGGTGGTGCTCGACTTCAAATGAAATTAGCGTACAATCCCTTGGCGCCAGTCTTTTTGTTTTTGCTCCAGTGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
-tggatgg
- - - - - - - -caatgca
- - - - - - - - - - - - - - - - -ctgttgt
- - - - - - - - - - - - - - - - - - - - - -tggtgag
- - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgttgg