Sequence
atgc intronic sequence ATGC exonic sequencegttgcatttctcaatagagcactgccactgccgctactgcttcttctgcaatcttcattgtctaataatggtttgctttgttggatgcagGCAGGGGTGGACATGGTGGCGGAACTGGTTGGTGTGACTTTAGGACCAAAAGGAAGGAATGTTGTGTTGCAGAACAAGTATGGGCCTCCCAAGATTGTTA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0010g00920.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA01G09520.1 (Glycine max), 3'ss of exon 1
gttgcatttctcaatagagcactgccactgccgctactgcttcttctgcaatcttcattgtctaataatggtttgctttgttg-gatgcagGCAGGGGTGGACATGGTGGCGGAACTGGTTGGTGTGACTTTAGGACCAAAAGGAAGGAATGTTGTGTTGCAGAACAAGTATGGGCCTCCCAAGATTGTTA
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gtaaggatttt-----ggactctgttagt----ttaacacttggttttggttcttcacaagatgtgagtgagttggtgtgttgtggtgcagGCAGGAGTGGACATGGTGGCTGAGCTGCTTGGTGTGACATTGGGTCCAAAGGGGAGAAATGTTGTGCTGCCAAATAAGTATGGACCACCCAAGATTGTAA
upper sequence: Vv01s0010g00920.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA02G13980.1 (Glycine max), 3'ss of exon 1
----gttgcatttctcaatagagcactgcca--ctgccgctactgct-tcttctgcaatcttcat-tgtctaata-atggtttgctttgttg-gatgcagGCAGGGGTGGACATGGTGGCGGAACTGGTTGGTGTGACTTTAGGACCAAAAGGAAGGAATGTTGTGTTGCAGAACAAGTATGGGCCTCCCAAGATTGTTA
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aagattcgaaacaaataataaattcttaaaagacaaactaaattattcttttctagaaactaaagatatcaggcatattattctcaacatggcggtgcagGCAGGAGTGGACATGGTGGCTGAGCTGCTTGGTGTGACATTGGGTCCAAAGGGGAGAAATGTTGTGCTGCCAAATAAGTATGGACCACCCAAGATAGTAA
upper sequence: Vv01s0010g00920.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT1G26230.1 (Arabidopsis thaliana), 3'ss of exon 1
gttgcatttctcaatagagcactgccactgccgctactgcttcttctgca-atcttcattgtctaataatggtttgctttgttggatgcagGCAGGGGTGGACATGGTGGCGGAACTGGTTGGTGTGACTTTAGGACCAAAAGGAAGGAATGTTGTGTTGCAGAACAAGTATGGGCCTCCCAAGATTGTTA
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------------------gttttctcgttcttctttcgggcacttttatagaatttcgttttcttatgatggataa---tggtgg-tgaagGCAGGTGCAGATATGGTGGCTAAACTATTAGGCGTGACGTTAGGTCCAAAGGGACGAAACGTGGTGTTGCAGAACAAGTACGGGCCTCCTAGGATTGTCA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.actgcttcttctgcaatcttcattgtctaataatggtttgctttgttggatgcagGCAGGGGTGGACATGGTGGCGGAACTGGTTGGTGTGACTTTAGGACCAAAAGGAAGGAATGTTGTGTTGCAGAACAAGTATGGGCCTCCCAAGATTGTTA
gtctaat putative branch site (score: 3)
ctttgtt putative PPT
tctaataat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttgcatttctcaatagagcactgccactgccgctactgcttcttctgcaatcttcattgtctaataatggtttgctttgttggatgcagGCAGGGGTGGACATGGTGGCGGAACTGGTTGGTGTGACTTTAGGACCAAAAGGAAGGAATGTTGTGTTGCAGAACAAGTATGGGCCTCCCAAGATTGTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA