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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtggtggcaatctcacaaatacgtctatgagtacggttcagggcggtaatccgatggcagTCTGCAAAGGGGATCTAGTTGGCTCTTCTTCATGTTCCTCGGCTTCCATGGTAGACTCATTTGGCCCAAACCTCTGGGACCATCCTGCCAATTCACAAAC

Basic information

species Vitis vinifera
transcript Vv01s0010g00740.t01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0010g00740.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA01G09400.1 (Glycine max), 3'ss of exon 1
gtggtggcaatctcacaaatacgtctatgagtacggttcagggcggtaatccgatggcagTCTGCAAAGGGGATCTAGTTGGCTCTTCTTCATGTTCCTCGGCTTCCATGGTAGACTCATTTGGCCCAAACCTCTGGGACCATCCTGCCAATTCACAAAC---------
   |||  ||| |  ||| | | ||| |   || ||||      || ||| | |||   ||| ||| ||||||| |  |||| ||||||||||||||||| ||||| ||||| ||||||||||| ||||||  ||||||  | ||  ||  ||| ||||          
---gtgcaaatattgcaagttcttctgtagctatggttggcctggggaattctatgaatgtcagcagagGGGATTTGATTGGTTCTTCTTCATGTTCCTCTGCTTCAATGGTGGACTCATTTGGTCCAAACTACTGGGAAAACCCCACCTGTTCCCAAAACTTGGGATT

upper sequence: Vv01s0010g00740.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA02G13860.1 (Glycine max), 3'ss of exon 1
gtggtggcaatctcacaaatacgtctatgagtacggttcagggcggtaatccgatggcagTCTGCAAAGGGGATCTAGTTGGCTCTTCTTCATGTTCCTCGGCTTCCATGGTAGACTCATTTGGCCCAAACCTCTGGGACCATCCTGCCAATTCACAAAC---------
                           |      || |  |||   |||| | |||   ||| ||| ||||||| |  |||| ||||||||||||||||| ||||| ||||| |||||| || | |||||   ||||||  | ||  |||  || ||||          
--------------------------gttttgttggcttgggg-aataattctatgaatgtcagcagagGGGATTTGATTGGTTCTTCTTCATGTTCCTCTGCTTCAATGGTGGACTCACTTAGTCCAAATTACTGGGAAAACCCCACCAGCTCCCAAAAGTTGGGATT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggcaatctcacaaatacgtctatgagtacggttcagggcggtaatccgatggcagTCTGCAAAGGGGATCTAGTTGGCTCTTCTTCATGTTCCTCGGCTTCCATGGTAGACTCATTTGGCCCAAACCTCTGGGACCATCCTGCCAATTCACAAAC
    atctcac  putative branch site (score: 3)
         acaaata  TA-rich tract