1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaacatatgcacgttctctttctccctccctctattctgggaaaaccctaacatacaattaaacagTTGCAGATACTGTATTGCAAAGCCCACCGAAGCGGGCCAGGACAATGGCCACTGAATCTTCCATCAAAGATGCTTTCGCCAATTACACTGACTACCTCAA
species | Vitis vinifera |
transcript | Vv01s0010g00580.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ATTTTACAGGTTGTTTCTCATGGCACCCAAACCCCACCGCTTCCCCCAAG TTGCAGATACTGTATTGCAAAGCCCACCGAAGCGGGCCAGGACAATGGCCAEST: gi|26257309|gb|CA808372.1|CA808372
genomic: ATTTTACAGGTTGTTTCTCATGGCACCCAAACCCCACCGCTTCCCCCAAGgtaacatatg ... aattaaacagTTGCAGATACTGTATTGCAAAGCCCACCGAAGCGGGCCAGGACAATGGCCA
EST: ATTTTACAGGTTGTTTCTCATGGCACCCAAACCCCACCGCTTCCCCCAAG TTGCAGATACTGTATTGCAAAGCCCACCGAAGCGGGCCAGGACAATGGCCA
genomic: ATTTTACAGGTTGTTTCTCATGGCACCCAAACCCCACCGCTTCCCCCAAGgtaacatatg ... aattaaacagTTGCAGATACTGTATTGCAAAGCCCACCGAAGCGGGCCAGGACAATGGCCA
cgttctctttctccctccctctattctgggaaaaccctaacatacaattaaacagTTGCAGATACTGTATTGCAAAGCCCACCGAAGCGGGCCAGGACAATGGCCACTGAATCTTCCATCAAAGATGCTTTCGCCAATTACACTGACTACCTCAA
ccctaac putative branch site (score: 2)
taacatacaattaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacatatgcacgttctctttctccctccctctattctgggaaaaccctaacatacaattaaacagTTGCAGATACTGTATTGCAAAGCCCACCGAAGCGGGCCAGGACAATGGCCACTGAATCTTCCATCAAAGATGCTTTCGCCAATTACACTGACTACCTCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG