1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ttaaaaactctacattatgcacattgtaactgttttgtagggaaaggtttatgtgggcatctttcgacattcaagtgttttttttcctattttggtacagCTATCCGCATAAGGAAAGGGTGGATGCCAGTGAGAGCTACACATTAGACAGTATAAGACACTTTTTAATCAGGCAAGAGGATAGCATCATATTTAGCCTC
species | Vitis vinifera |
transcript | Vv01s0010g00480.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
ggtttatgtgggcatctttcgacattcaagtgttttttttcctattttggtacagCTATCCGCATAAGGAAAGGGTGGATGCCAGTGAGAGCTACACATTAGACAGTATAAGACACTTTTTAATCAGGCAAGAGGATAGCATCATATTTAGCCTC
tgttttttttcctatt CT-rich tract
ttttttttcctatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttaaaaactctacattatgcacattgtaactgttttgtagggaaaggtttatgtgggcatctttcgacattcaagtgttttttttcctattttggtacagCTATCCGCATAAGGAAAGGGTGGATGCCAGTGAGAGCTACACATTAGACAGTATAAGACACTTTTTAATCAGGCAAGAGGATAGCATCATATTTAGCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
-taaaaac
- - - - - - - -tatgcac
- - - - - - - - - - - - - - - - - - - agggaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cattcaa