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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcctctctctatttctctgtattatcaatttatatttatatgtatatctacctgggtatttggattgattattactaaagaacacgaaattgcagAACTACCGGGTTTCTATTATGACGTGGAGAAGAACAGGTACTTCCCTATCAAAGCCCCAATTCCAGGTTCTTCTTCTTCTTCCACCCGTCTCAACAAACC

Basic information

species Vitis vinifera
transcript Vv01s0010g00400.t01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351023432|gb|FQ432815.1|FQ432815
EST:     TTGTGATTTGGGTTTCTCCTTTCCCCAGCCCAAGATAATGCAGCCAAGGG                         AACTACCGGGTTTCTATTATGACGTGGAGAAGAACAGGTACTTCCCTATCA
genomic: TTGTGATTTGGGTTTCTCCTTCCCCCAGCCCAAGATAATGCAGCCAAGGGgtcctctctc ... gaaattgcagAACTACCGGGTTTCTATTATGACGTGGAGAAGAACAGGTACTTCCCTATCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtatatctacctgggtatttggattgattattactaaagaacacgaaattgcagAACTACCGGGTTTCTATTATGACGTGGAGAAGAACAGGTACTTCCCTATCAAAGCCCCAATTCCAGGTTCTTCTTCTTCTTCCACCCGTCTCAACAAACC
                                tactaaa  putative branch site (score: 1)
                       attgattattactaaa  TA-rich tract