Sequence
atgc intronic sequence ATGC exonic sequence...ttattctttccagaatttaaactgagatcttcatggtattgatatttcttaatattaactctgtggaagtactgatttcaattattttgtgaaatttgagGTTAAAATACTATGTCACCTGCACCATGACCAATTGAGGGCTGTTTTTCATGTCTCACAGAGGATTAGGAAGGCA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s2668g00010.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA02G05140.1 (Glycine max), 3'ss of exon 2
ttattctttccagaatttaaactgagatcttcat--ggtattgatatttcttaatattaactctgtg-gaagtactgatttcaattattttgtgaaatttgagGTTAAAATACTATGTCACCTGCACCATGACCAATTGAGGGCTGTTTTTCATGTCTCACAGAGGATTAGGAAGGCA
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--gcattttactgtattcaatcaaatggcttagttatgtattaattcttatctgtttgaactatttctgttatgttgacc-cattctctctgacttaattgagGTTAAAATACTATGCCACCTGCACCATGACCAACTGAGGGCTGTCTTCCATGTTTCTCAAAGAATTAGAAAAGCT
upper sequence: Vv00s2668g00010.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA16G23250.1 (Glycine max), 3'ss of exon 2
----ttattct-ttccagaatttaaactgagatcttcatggtattgatatttcttaatattaactctgtggaagtactgatttcaattattttgtgaaatttgagGTTAAAATACTATGTCACCTGCACCATGACCAATTGAGGGCTGTTTTTCATGTCTCACAGAGGATTAGGAAGGCA
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cattttactgtattcaattgattggcttaagttatgtatta-attcttatctgtttgaaccatttctgtta---tgttgacacgttctctttcacttaatt-gagGTTAAAATTCTGTGCCACCTGCACCATGACCAACTGAGGGCTGTCTTCCATGTTTCTCAAAAAATTAGAAAAGCT
upper sequence: Vv00s2668g00010.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT4G35930.1 (Arabidopsis thaliana), 3'ss of exon 2
-ttattctttc--cagaatttaaactgagatcttcatggtattgat-atttcttaatattaactctgtggaagtactgatttcaattattttgtgaaatttgagGTTAAAATACTATGTCACCTGCACCATGACCAATTGAGGGCTGTTTTTCATGTCTCACAGAGGATTAGGAAGGCA
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gtaagtttttcgtttacatttaagttaataggttctttttggtagtcatctgaatgtatgaagttagttcttataaagatcacactt--tctgt-aacttccagGTTAAAATAGTTTGTCATCTGCACCATGACCAGCTGAAGGCTGTTTTCCATGTTTCTCAAAGAATAAGAATGGCC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttcttaatattaactctgtggaagtactgatttcaattattttgtgaaatttgagGTTAAAATACTATGTCACCTGCACCATGACCAATTGAGGGCTGTTTTTCATGTCTCACAGAGGATTAGGAAGGCA
atttcaattattttgt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttattctttccagaatttaaactgagatcttcatggtattgatatttcttaatattaactctgtggaagtactgatttcaattattttgtgaaatttgagGTTAAAATACTATGTCACCTGCACCATGACCAATTGAGGGCTGTTTTTCATGTCTCACAGAGGATTAGGAAGGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - tctttcc
- - - - - - - - - aaactga
- - - - - - - - - - - - - - -ttcatgg