Sequence
atgc intronic sequence ATGC exonic sequencegtatgttacatgttctttaagtctctttctctctctctctctctctctcacacacactaaactgtagctcctgcttctctcagGTATTTGCATGAAGTTTGCCTGCCTTCTACTGTACATAGAAACTTCAAATCGGCAAATATTTTGCTTGATGAAGAGCTCAACCCCCATTTATCGGACTGT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s2594g00010.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA09G00970.1 (Glycine max), 3'ss of exon 12
---------------------------------------------------gtatgttacatgttctttaagtctctttctctc------tctctctctctctctcacacacactaaactgtagc-tcctgcttc---tctcagGTATTTGCATGAAGTTTGCCTGCCTTCTACTGTACATAGAAACTTCAAATCGGCAAATATTTTGCTTGATGAAGAGCTCAACCCCCATTTATCGGACTGT
| ||| | | || | | ||| | | | || || || |||| | | | | ||||| | ||||||| |||||||||| ||| |||||||| |||||||||||| |||||||| |||||||| || |||||||| |||||||| || || | || ||||||
gtatgtttcattcacatctgacatattaagtctctctttggcatggccttgactggctacccgacccccctgtttttccctcaagtagagtgagttagcatatcacattcaggctaatttcttgagttatgctttgtatgtcagGTACCTGCATGAAGTGTGCTTGCCTTCTGTTGTACATAGAAATTTCAAATCTGCAAATATATTACTTGATGAGGAGCTCAATCCTCACCTGTCTGACTGT
upper sequence: Vv00s2594g00010.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA15G11820.1 (Glycine max), 3'ss of exon 12
------------------------------------------------------------------gtatgttacatgttctttaagtctctttctctctctctctc------------tctctctcacacacactaaactgt-agctcctgctt---ctctcagGTATTTGCATGAAGTTTGCCTGCCTTCTACTGTACATAGAAACTTCAAATCGGCAAATATTTTGCTTGATGAAGAGCTCAACCCCCATTTATCGGACTGT
| | | | | | |||| | ||| | | || | || || || |||| | | | | ||||| || ||||||| |||||||||| ||| |||||||| |||||||||||| |||||||| |||||||| || || ||||| |||||||| || || | || |||||
gtatgttacattcacatatctgacatattaagtctctccttggcatggccttgactggctactccacccccctgcttttccctcaagtatatttgttttagccttgtagagtgagttagcatgtcacattcaggctaatttctcaagttatgctttgtctatcagGTACCTGCATGAAGTGTGCTTGCCTTCTGTTGTACATAGAAATTTCAAATCTGCAAATATATTACTCGATGAGGAGCTCAATCCTCACCTGTCTGACTGC
upper sequence: Vv00s2594g00010.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT4G22130.2 (Arabidopsis thaliana), 3'ss of exon 7
gtatgttacatgttctttaagtctctttctctctctctctctctctctcacacacactaaactgtagctcc------tgcttctctcagGTATTTGCATGAAGTTTGCCTGCCTTCTACTGTACATAGAAACTTCAAATCGGCAAATATTTTGCTTGATGAAGAGCTCAACCCCCATTTATCGGACTGT
|||||| || || || | | | ||||| | | | || || ||||| || | | || | ||||| ||||| ||||||||| ||||||| | ||| ||||||||||||||||| || ||||| ||||| || ||||| || || || || |||| ||| ||
gtatgt-gcaaattgtt-atgattatttctagcctctttaatgaacaacattcatcttaaaccaaagttttctgattttgtttttctagGTACTTGCACGAAGTTTGCTTGCCTTCAATTGTCCATAGAAACTTCAAATCAGCGAATATATTGCTAGACGAAGAACTTAATCCTCACCTATCAGACAGT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctctctctctctctctctctcacacacactaaactgtagctcctgcttctctcagGTATTTGCATGAAGTTTGCCTGCCTTCTACTGTACATAGAAACTTCAAATCGGCAAATATTTTGCTTGATGAAGAGCTCAACCCCCATTTATCGGACTGT
cactaaa putative branch site (score: 2)
ctcctgcttctctc putative PPT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgttacatgttctttaagtctctttctctctctctctctctctctcacacacactaaactgtagctcctgcttctctcagGTATTTGCATGAAGTTTGCCTGCCTTCTACTGTACATAGAAACTTCAAATCGGCAAATATTTTGCTTGATGAAGAGCTCAACCCCCATTTATCGGACTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA