Sequence
atgc intronic sequence ATGC exonic sequence...gagcccttttcggttactttctattatctaaaacagttgtgttctgatttgaaaacatgaaatggttggtgatgtgctgggttgttgatgattgatacagGTTCTTGAATGCTGGGATATTTGGGAACGGAAGAGAGTCATGCCACACACTGCCTCACTCAACAACAAGAGCCGCCATGCTCGTGAGGATCAACACCCTC
Basic information
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161720510|gb|FC071202.1|FC071202EST: TCACATAGGAGAACCAAACAAGGTGGTGCCCTTCAGAAGGAGCTCATCAG GTTCTTGAATGCTGGGATATTTGGGAACGGAACAGAGTCATGCCACACACT
genomic: TCACATAGGAGAACCAAACAAGGTGGTGCCCTTCAGAAGGAGCTCATCAGgtaaaaatac ... attgatacagGTTCTTGAATGCTGGGATATTTGGGAACGGAAGAGAGTCATGCCACACACT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gatttgaaaacatgaaatggttggtgatgtgctgggttgttgatgattgatacagGTTCTTGAATGCTGGGATATTTGGGAACGGAAGAGAGTCATGCCACACACTGCCTCACTCAACAACAAGAGCCGCCATGCTCGTGAGGATCAACACCCTC
aaaacat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gagcccttttcggttactttctattatctaaaacagttgtgttctgatttgaaaacatgaaatggttggtgatgtgctgggttgttgatgattgatacagGTTCTTGAATGCTGGGATATTTGGGAACGGAAGAGAGTCATGCCACACACTGCCTCACTCAACAACAAGAGCCGCCATGCTCGTGAGGATCAACACCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- gcccttt
- - - - - - - - - - - - - -ctaaaac
- - - - - - - - - - - - - - - - - - -tgtgttc
- - - - - - - - - - - - - - - - - - - - - - - - - gaaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgctgg