1 5' 3' | 2 5' 3' | 3 5' 3' |
...gaagtgaagaaggaagagaaaaaccctataactgcaaagcccaattccaagtatccctggaattttctcaatatgcttcttgaacatgccactgttacagGTATTTGTTCTGCTGTTCTTATTCGCACAATGTAGCTCCAAAAGGGAAATACATTGCTTTCGTTACAACAGAAGCAGAGACTGATAACCCTGAGATAGAA
species | Vitis vinifera |
transcript | Vv00s2317g00010.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
tccaagtatccctggaattttctcaatatgcttcttgaacatgccactgttacagGTATTTGTTCTGCTGTTCTTATTCGCACAATGTAGCTCCAAAAGGGAAATACATTGCTTTCGTTACAACAGAAGCAGAGACTGATAACCCTGAGATAGAA
aattttctcaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaagtgaagaaggaagagaaaaaccctataactgcaaagcccaattccaagtatccctggaattttctcaatatgcttcttgaacatgccactgttacagGTATTTGTTCTGCTGTTCTTATTCGCACAATGTAGCTCCAAAAGGGAAATACATTGCTTTCGTTACAACAGAAGCAGAGACTGATAACCCTGAGATAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - -gaagaag
- - - - - - - - agaaaaa
- - - - - - - - - - - -ccctata
- - - - - - - - - - - - - - - -ctgcaaa
- - - - - - - - - - - - - - - - - - - gcccaat
- - - - - - - - - - - - - - - - - - - - - - - ccaagta
- - - - - - - - - - - - - - - - - - - - - - - - - - - ccctgga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcttct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acatgcc