Sequence
atgc intronic sequence ATGC exonic sequence...tataattaatgattattggtcaattcgaatttaattatttctatgattttgttttgtaaagcgtgatttggtttaaataagtgtgctgttttttccgcagAGTTTAGATCTTTCAAGGATAGATCGGATCATTCGGTGTTCACTTCGATCTCAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s2207g00010.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA05G26240.1 (Glycine max), 3'ss of exon 1
-------------------------------------------------------------------------tataattaatgat--tattggtc---aattcgaattt--aattatttctatgattttgttttgtaaagcgtgatt-tggtttaaataagtgtgctgtttttt-ccgcagAGTTTAGATCTTTCAAGGATAGATCGGATCATTCGGTGTTCACTTCGATCTCAAG
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gtaagttttattccttcctatccaattccctctcttctcctccaaattcgcctccgattcgagttcggaacttcagatttgcgaatcgtattcgtctcattttccaatttcggatcgttttgacctccttattgcgtgatttttgtttctgttttgtttaattaatctgttgcatgttgcagAGTTTAGATCTTTCGAGAATTGACCGGATTATTCGGTGCTCGCTGCGATCTCAAG
upper sequence: Vv00s2207g00010.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT1G31070.2 (Arabidopsis thaliana), 3'ss of exon 1
---------tataattaatgattattggtcaattcgaatttaattatttctatgattttgttttgtaaagcgtgatttggtttaaataagtgtgctgttttttccgc----agAGTTTAGATCTTTCAAGGATAGATCGGATCATTCGGTGTTCACTTCGATCTCAAG
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gttcgtgatttcgattttttttttccagattcttcgttaagatttggatctcagattcagttt----aagcgtaattaactgataacactgttattttattttctgcttacagAATTTGGATCTTCCAAGAATAGATCGGATCATTAGATGTTCACTTCACTCTCAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.attttgttttgtaaagcgtgatttggtttaaataagtgtgctgttttttccgcagAGTTTAGATCTTTCAAGGATAGATCGGATCATTCGGTGTTCACTTCGATCTCAAG
ctgttttttcc CT-rich tract
atttggtttaaataa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tataattaatgattattggtcaattcgaatttaattatttctatgattttgttttgtaaagcgtgatttggtttaaataagtgtgctgttttttccgcagAGTTTAGATCTTTCAAGGATAGATCGGATCATTCGGTGTTCACTTCGATCTCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaataag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctgtt