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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtatcttaattgatctcttccatgcatactttctatatatcttagatggggtgatgataatatgttgaatcagCTGGAGCATGTGGCTTTGGCGAATATGGAAGAAGTGTTAACGGCGGCAACGTTGGCGCAGTTTCTAGGCTATACAGGAATGGGACTGGCTGCGGTGCATG

Basic information

species Vitis vinifera
transcript Vv00s1455g00010.t01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s1455g00010.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA05G05430.1 (Glycine max), 3'ss of exon 2
--------------------gtacgtatcttaattgatctctt--ccatgcatactttctatatatcttagatggggtgatgataat-atgttgaatcagCTGGAGCATGTGGCTTTGGCGAATATGGAAGAAGTGTTAACGGCGGCAACGTTGGCGCAGTTTCTAGGCTATACAGGAATGGGACTGGCTGCGGTGCATG
                      |   ||  | ||| |   | |  |    || |     |||     || | |    | ||  |||| |   ||  ||||  ||||| ||||||||||||||||||||||||| ||| || |  || |  || |  | ||| ||||||||||  |||||||| | |||||| ||||||||
cttctaaggtagttgtaaaaaaaaacattattatttacaccatgacacaacaaataaaatatgatcgttcgttcaattcatattaattactatgtttcagGGGGAGCTTGTGGCTTTGGCGAATATGGAAGAACTGTGAATGATGGAAGTGTGGCAGGAGTGTCTAGGCTATGGAGGAATGGAAGTGGCTGTGGTGCATG

upper sequence: Vv00s1455g00010.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA17G15710.2 (Glycine max), 3'ss of exon 1
-----------------------gtacgtatcttaattgatctcttccatgcatactttctatatatcttagatggggtgatga-taatatgttgaatcagCTGGAGCATGTGGCTTTGGCGAATATGGAAGAAGTGTTAACGGCGGCAACGTTGGCGCAGTTTCTAGGCTATACAGGAATGGGACTGGCTGCGGTGCATG
                            ||  |  || |   |  |  |   | |   |   ||| |     |||     |  | ||| || ||   ||||  ||||| ||||||||||||||||||||||| | ||| || |  || |  || |  | ||| ||||||||||  |||||||| | ||| || ||||||||
ttagttttgcagacacgtatttcaagaatacttctatggtatttgtataaaaaaatcattattatttgcagcatgacacaacaaataaaatatttt-tcagGGGGAGCTTGTGGCTTTGGCGAATATGGAAGGACTGTGAATGATGGAAGTGTGGCAGGAGTGTCTAGGCTATGGAGGAATGGAAGTGGTTGTGGTGCATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110357136|gb|EC920473.1|EC920473
EST:     ATACTCACGGGCAACATATTATGGCAGCCCTGATTGCTTAGGGACTCCAA                         CTGGAGCATGTGGCTTTGGCGAATATGGAAGAAGTGTTAACGGCGGCAACG
genomic: ATACTCACGGGCAACATATTATGGCAGCCCTGATTGCTTAGGGACTCCAAgtacgtatct ... gttgaatcagCTGGAGCATGTGGCTTTGGCGAATATGGAAGAAGTGTTAACGGCGGCAACG
EST: gi|161709565|gb|FC061395.1|FC061395
EST:     ATACTCACGGGCAACATATTATGGCAGCCCTGATTGCTTAGGGACTCCAA                         CTGGAGCATGTGGCTTTGGCGAATATGGAAGAAGTGTTAACGGCGGCAACG
genomic: ATACTCACGGGCAACATATTATGGCAGCCCTGATTGCTTAGGGACTCCAAgtacgtatct ... gttgaatcagCTGGAGCATGTGGCTTTGGCGAATATGGAAGAAGTGTTAACGGCGGCAACG
EST: gi|110357223|gb|EC920610.1|EC920610
EST:     ATACTCACGGGCAACATATTATGGCAGCCCTGATTGCTTAGGGACTCCAA                         CTGGAGCATGTGGCTTTGGCGAATATGGAAGAAGTGTTAACGGCGGCAACG
genomic: ATACTCACGGGCAACATATTATGGCAGCCCTGATTGCTTAGGGACTCCAAgtacgtatct ... gttgaatcagCTGGAGCATGTGGCTTTGGCGAATATGGAAGAAGTGTTAACGGCGGCAACG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tccatgcatactttctatatatcttagatggggtgatgataatatgttgaatcagCTGGAGCATGTGGCTTTGGCGAATATGGAAGAAGTGTTAACGGCGGCAACGTTGGCGCAGTTTCTAGGCTATACAGGAATGGGACTGGCTGCGGTGCATG
       atactttctatatat  TA-rich tract