1 5' 3' | 2 5' 3' | 3 5' 3' |
gtgggcacaaaaatcattaattggtttttcttcaattatttatttgagcactaattcaattttttcttatatgtttcgtcgcagGAGTGTAAGCATTTGGGATTTGACACAATCGAGCTAAATGTGGGTTCACTAGGAATTCCAGAAGAAACTCTTTTGAGATTTGTGCGTTTGATTAAGAGTG
species | Vitis vinifera |
transcript | Vv00s1274g00010.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GTCCATTTGCTTTCAAAGAATATATAGAG GAGTGTAAGCATTTGGGATTTGACACAATCGAGCTAAATGTGGGTTCACTAEST: gi|110363179|gb|EC926751.1|EC926751
genomic: GTCCATCTGCTTTCAAAGAATATATAGAGgtgggcacaa ... ttcgtcgcagGAGTGTAAGCATTTGGGATTTGACACAATCGAGCTAAATGTGGGTTCACTA
EST: CCGAACATTTGCGGGGCAAGGGTCCATCTGCTTTCAAAGAATATATAGAG GAGTGTAAGCATTTGGGATTTGACACAATCGAGCTAAATGTGGGTTCACTAEST: gi|27584195|gb|CB006890.1|CB006890
genomic: CCGAACATTTGCGGGGCAAGGGTCCATCTGCTTTCAAAGAATATATAGAGgtgggcacaa ... ttcgtcgcagGAGTGTAAGCATTTGGGATTTGACACAATCGAGCTAAATGTGGGTTCACTA
EST: CCGAACATTTGCGGGGCAAGGGTCCATCTGCTTTCAAAGAATATATAGAG GAGTGTAAGCATTTGGGATTTGACACAATCGAGCTAAATGTGGGTTCACTAEST: gi|71866679|gb|DT015734.1|DT015734
genomic: CCGAACATTTGCGGGGCAAGGGTCCATCTGCTTTCAAAGAATATATAGAGgtgggcacaa ... ttcgtcgcagGAGTGTAAGCATTTGGGATTTGACACAATCGAGCTAAATGTGGGTTCACTA
EST: CCGAACATTTGCGGGGCAAGGGTCCATCTGCTTTCAAAGAATATATAGAG GAGTGTAAGCATTTGGGATTTGACACAATCGAGCTAAATGTGGGTTCACTA
genomic: CCGAACATTTGCGGGGCAAGGGTCCATCTGCTTTCAAAGAATATATAGAGgtgggcacaa ... ttcgtcgcagGAGTGTAAGCATTTGGGATTTGACACAATCGAGCTAAATGTGGGTTCACTA
cttcaattatttatttgagcactaattcaattttttcttatatgtttcgtcgcagGAGTGTAAGCATTTGGGATTTGACACAATCGAGCTAAATGTGGGTTCACTAGGAATTCCAGAAGAAACTCTTTTGAGATTTGTGCGTTTGATTAAGAGTG
cactaat putative branch site (score: 2)
tttcgtc putative PPT
actaattcaatttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgggcacaaaaatcattaattggtttttcttcaattatttatttgagcactaattcaattttttcttatatgtttcgtcgcagGAGTGTAAGCATTTGGGATTTGACACAATCGAGCTAAATGTGGGTTCACTAGGAATTCCAGAAGAAACTCTTTTGAGATTTGTGCGTTTGATTAAGAGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA