1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gcatatcttcccatatgtgtgtttaattatcatgaatttggagtcttgtgtataatcagtctttctcaaaattttctttgtttgtacaattatatgacagGTTGGACGGATGGCAGGCCAATTTGCCAAACCTAGATCGGATCCTTTTGAGGTTAAAGATGGGGTAAAGCTCCCAAGTTATCGGGGAGACAATATCAATA
species | Vitis vinifera |
transcript | Vv00s1217g00010.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGCAGATGGGTATTGTTCTCACTTTCGGTGCTCAATTGCCTGTCATCAAG GTTGGACGGATGGCAGGCCAATTTGCCAAACCTAGATCGGATCCTTTTGAGEST: gi|349833289|gb|FQ416667.1|FQ416667
genomic: TGCAGATGGGTATTGTTCTCACTTTCGGTGCTCAATTGCCTGTCATCAAGgttcgatctt ... tatatgacagGTTGGACGGATGGCAGGCCAATTTGCCAAACCTAGATCGGATCCTTTTGAG
EST: TGCAGATGGGTATTGTTCTCACTTTCGGTGCTCAATTGCCTGTCATCAAG GTTGGACGGATGGCAGGCCAATTTGCCAAACCTAGATCGGATCCTTTTGAGEST: gi|110371602|gb|EC935714.1|EC935714
genomic: TGCAGATGGGTATTGTTCTCACTTTCGGTGCTCAATTGCCTGTCATCAAGgttcgatctt ... tatatgacagGTTGGACGGATGGCAGGCCAATTTGCCAAACCTAGATCGGATCCTTTTGAG
EST: TGCAGATGGGTATTGTTCTCACTTTCGGTGCTCAATTGCCTGTCATCAAG GTTGGACGGATGGCAGGCCAATTTGCCAAACCTAGATCGGACCCTTTTGAG
genomic: TGCAGATGGGTATTGTTCTCACTTTCGGTGCTCAATTGCCTGTCATCAAGgttcgatctt ... tatatgacagGTTGGACGGATGGCAGGCCAATTTGCCAAACCTAGATCGGATCCTTTTGAG
ttgtgtataatcagtctttctcaaaattttctttgtttgtacaattatatgacagGTTGGACGGATGGCAGGCCAATTTGCCAAACCTAGATCGGATCCTTTTGAGGTTAAAGATGGGGTAAAGCTCCCAAGTTATCGGGGAGACAATATCAATA
aaaattttctttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcatatcttcccatatgtgtgtttaattatcatgaatttggagtcttgtgtataatcagtctttctcaaaattttctttgtttgtacaattatatgacagGTTGGACGGATGGCAGGCCAATTTGCCAAACCTAGATCGGATCCTTTTGAGGTTAAAGATGGGGTAAAGCTCCCAAGTTATCGGGGAGACAATATCAATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - -tcttccc
- - - - - - - -tgtgtgt
- - - - - - - - - - - - - - - catgaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcaaaa