Sequence
atgc intronic sequence ATGC exonic sequence...actcccacaaggtagtacaacgacttgaaagactagaaaggaaacaaccaaggaataacagattttatgtgtgtaacactattttgatgattgtttacagACGGACAAGGCTTCTGTCCTCGGAGATGCTATCAAGTACTTGAAACAGCTCCAAGAACGCGTGAAGACTCTCGAGGAACAAACGACAAAGAAAACAGTGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0824g00020.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA01G40600.1 (Glycine max), 3'ss of exon 4
actcccacaaggtagtacaacgacttgaaagactagaaaggaaacaaccaaggaataacagattttatgt-gtgtaacactattttgatgattg--tttacagACGGACAAGGCTTCTGTCCTCGGAGATGCTATCAAGTACTTGAAACAGCTCCAAGAACGCGTGAAGACTCTCGAGGAACAAACGACAAAGAAAACAGTGG
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--atatatatgatcaaacacacgctt-aaagacttaacctaagttaaaccaactatacatgactaaatgttgaactaacttatatatatgattgcatgcacagATGGACAAGGCTTCTGTGTTGGGAGATGCTGTCAAGTATGTGAAACAACTACAAGAACGTGTGCAAACTCTGGAGGAGCAAGCAGCGAAGAGAACACTTG
upper sequence: Vv00s0824g00020.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA11G04690.1 (Glycine max), 3'ss of exon 3
----------------------------------------------------------------act-cccacaaggtagtacaacgacttgaaagactagaaaggaaac--aaccaaggaataacagatt----ttatgtgtgtaac---actattttgatgattg--tttacagACGGACAAGGCTTCTGTCCTCGGAGATGCTATCAAGTACTTGAAACAGCTCCAAGAACGCGTGAAGACTCTCGAGGAACAAACGACAAAGAAAACAGTGG
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gtactgatctcacgttaataatttctctgttaatctcaattctcatgcatgatgcacctcagttacaatttatttatttatatatatgatcagcactcacgattgaaaacttaacctatgttcaataaactataactaaatgtgtaactaagttatatatatggttgcatgcacagATGGATAAGGCTTCTGTTTTGGGAGATGCTATAAAGTATGTGAAACAACTACAAGAACGTGTGCAAACTCTGGAGGAGCAAGCAGCGAAGAGAACAGCAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaccaaggaataacagattttatgtgtgtaacactattttgatgattgtttacagACGGACAAGGCTTCTGTCCTCGGAGATGCTATCAAGTACTTGAAACAGCTCCAAGAACGCGTGAAGACTCTCGAGGAACAAACGACAAAGAAAACAGTGG
aataacagattttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
actcccacaaggtagtacaacgacttgaaagactagaaaggaaacaaccaaggaataacagattttatgtgtgtaacactattttgatgattgtttacagACGGACAAGGCTTCTGTCCTCGGAGATGCTATCAAGTACTTGAAACAGCTCCAAGAACGCGTGAAGACTCTCGAGGAACAAACGACAAAGAAAACAGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- -cccacaa
- - - - - - - - - - - - - gaaagac
- - - - - - - - - - - - - - - - - - aaaggaa
- - - - - - - - - - - - - - - - - - - - - -acaacca
- - - - - - - - - - - - - - - - - - - - - - - - - -ggaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgtgt