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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactcatcccccgatcacccatttctcaactgtatcaattctttttgcttttttttttttcttttcttcttttcttttttactatgctgcaattattggattgattttgagtttttgttgattttcagTTCATTACACTGGGACTTTGCTTGATGGAACTCAGTTCGATTCCAGCCGTGATAGGGGGACTCCGTTCAAGTTCACCCTTGGCCAAG

Basic information

species Vitis vinifera
transcript Vv00s0769g00010.t01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0769g00010.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA03G21690.1 (Glycine max), 3'ss of exon 1
gtactcatcccccgatcacccatttctcaactgtatcaattctttttgcttttttttttttcttttcttcttttcttttttactatgctgc-aattattggattgattttgagtttttgttgattttcagTTCATTACACTGGGACTTTGCTTGATGGAACTCAGTTCGATTCCAGCCGTGATAGGGGGACTCCGTTCAAGTTCACCCTTGGCCAAG
                             |  | |    ||      |||| || |  | ||   | |  |||| | ||    ||   |   ||| |||   || || || | ||||      ||||||||||| || |||||||| ||||||||||| ||| |||| ||||||||| | |||||||| ||||| ||||  ||||| ||||| ||||
-------------------------tctgatggcactcttttgcagagcttattctaatctcccgtttggttttgtcttgctttaaatttttaatgatttatttaatctttaattttc-----ttttcagTTCACTATACTGGGACGTTGCTTGATGGCACTAAGTTTGATTCCAGCAGAGATAGGGGAACTCCTTTCAGTTTCACGCTTGGACAAG

upper sequence: Vv00s0769g00010.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA08G46090.2 (Glycine max), 3'ss of exon 1
gtactcatcccccgatcacccatttctcaactgtatcaattctttttgcttttttttttttcttttcttcttttcttttttactatgctgcaattattggattgattttgagtttttgttgattttcagTTCATTACACTGGGACTTTGCTTGATGGAACTCAGTTCGATTCCAGCCGTGATAGGGGGACTCCGTTCAAGTTCACCCTTGGCCAAG
               || || |  || ||||     |||||| | |      |  ||||  | ||||||||| | ||||| | ||       ||| ||   ||  ||| || ||||||   |||   |||||||||||| ||||||||||| || |||||| |||| ||||| ||||| || ||||   |||| ||||  ||||| || || ||||
--------------gtc-ccgaaatcgcaacgacgccaattcctctg-----tcgttttcacctttcttcttctttttttcatta-------attttt---tt--tttcgattttttg--aattgctagTTCATTACACGGGGACTTTGCTCGACGGAACTAAGTTTGATTCGAGCCGCGACAGGGATTCTCCCTTCAGCTTCACGCTCGGACAAG

upper sequence: Vv00s0769g00010.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA18G32830.1 (Glycine max), 3'ss of exon 1
gtactcatcccccgatcacccatttctcaactgtatcaattctttttgcttt-tttttttttcttttcttcttttcttttttactatgctgcaattattggattgattttgagtttttgttgattttcagTTCATTACACTGGGACTTTGCTTGATGGAACTCAGTTCGATTCCAGCCGTGATAGGGGGACTCCGTTCAAGTTCACCCTTGGCCAAG-
                          ||||  | | | |  |   || || | |  ||||  | ||||||||| |  || ||  | | || |  || | | | |  |||    | ||||   |||   |||||||||||| ||||||||||| || || ||| |||||||||| ||||| || ||||   |||| ||||  ||||| || || |||| 
-------------------------ttcaatcgaaacgacaccaattcctctatcgttttcacctttcttcttcttcttcttcttcttcttc--ttttcgtaattttttctgttgtttg--aattggtagtTCATTACACGGGGACTTTGCTCGACGGGACTAAGTTCGATTCGAGCCGCGACAGGGATTCTCCCTTCAGCTTCACGCTCGGACAAGG

upper sequence: Vv00s0769g00010.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT3G25230.1 (Arabidopsis thaliana), 3'ss of exon 1
gtactcatcccccgatcacccatttctcaactgtatcaattctttttgcttttttttttttcttttcttcttttcttttttactatgctgcaattattggattgat-tttgagtttttgttgatttt-cagTTCATTACACTGGGACTTTGCTTGATGGAACTCAGTTCGATTCCAGCCGTGATAGGGGGACTCCGTTCAAGTTCACCCTTGGCCAAG
                                               |   ||  ||  |   ||       |  |  ||| | ||   |   || ||| || ||   ||||| ||   ||| || | |||| ||||||||||| |||||||||||||| ||  |||| ||||| || |||||||| |  || || ||||| ||||| ||||| ||||
-----------------------------------------------gtaattaattaatcgattcagatactaatgcttttcgatttaggtttttttgaatcgaagcttgagcttgatttgtttctgcagTGCATTACACTGGAACTTTGCTTGATGGGACGAAGTTTGATTCGAGTCGTGATAGAGCAACGCCTTTCAAATTCACTCTTGGACAAG

upper sequence: Vv00s0769g00010.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT5G48570.1 (Arabidopsis thaliana), 3'ss of exon 1
gtactcatcccccgatcacccatttctcaactgtatcaattctttttgcttttttttttttcttttcttcttttcttttttactatgctgcaattattggattgattttgagtttttgttgatttt--cagTTCATTACACTGGGACTTTGCTTGATGGAACTCAGTTCGATTCCAGCCGTGATAGGGGGACTCCGTTCAAGTTCACCCTTGGCCAAG
                                                     |  |||    || ||    |    | | |  ||  |  |  | |      | || | || || ||||   |||  |||| ||||||||||| |||||| | ||||| ||  |||| ||||| |||||||| || || ||||| ||||| || || ||||||||||
----------------------------------------------------gtaatttgaaattgctgaagtctgatctgatgataatatatgtgtgaatcaggttctcagattgtgttttcttttgcagTGCATTACACTGGAACTTTGTTAGATGGTACCAAGTTTGATTCGAGCCGTGACAGAGGAACTCCTTTCAAATTTACTCTTGGCCAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110689824|gb|EE066384.1|EE066384
EST:     CAAGGAGGGTGAAGGCTGGGACACCCCTGAAAATGGCGATGAAGTTGAAG                         TTCATTACACTGGGACTTTGCTTGATGGAACTCAGTTCGATTCCAGCCGTG
genomic: CAAGGAGGGTGAAGGCTGGGACACCCCTGAAAATGGCGATGAAGTTGAAGgtactcatcc ... tgattttcagTTCATTACACTGGGACTTTGCTTGATGGAACTCAGTTCGATTCCAGCCGTG
EST: gi|71873918|gb|DT022973.1|DT022973
EST:     GCGATGAAGTTGAAG                         TTCATTACACTGGGACTTTGCTTGATGGAACTCAGTTCGATTCCAGCCGTG
genomic: GCGATGAAGTTGAAGgtactcatcc ... tgattttcagTTCATTACACTGGGACTTTGCTTGATGGAACTCAGTTCGATTCCAGCCGTG
EST: gi|161717751|gb|FC068159.1|FC068159
EST:     CAAGGAGGGTGAAGGCTGGGACACCCCTGAAAATGGCGATGAAGTTGAAG                         TTCATTACACTGGGACTTTGCTTGATGGAACTCAGTTCGATTCCAGCCGTG
genomic: CAAGGAGGGTGAAGGCTGGGACACCCCTGAAAATGGCGATGAAGTTGAAGgtactcatcc ... tgattttcagTTCATTACACTGGGACTTTGCTTGATGGAACTCAGTTCGATTCCAGCCGTG
EST: gi|34546871|gb|CF515103.1|CF515103
EST:     CAAGGAGGGTGAAGGCTGGGACACCCCTGAAAATGGCGATGAAGTTGAAG                         TTCATTACACTGGGACTTTGCTTGATGGAACTCAGTTCGATTCCAGCCGTG
genomic: CAAGGAGGGTGAAGGCTGGGACACCCCTGAAAATGGCGATGAAGTTGAAGgtactcatcc ... tgattttcagTTCATTACACTGGGACTTTGCTTGATGGAACTCAGTTCGATTCCAGCCGTG
EST: gi|34319038|gb|CF371792.1|CF371792
EST:     CAAGGAGGGTGAAGGCTGGGACACCCCTGAAAATGGCGATGAAGTTGAAG                         TTCATTACACTGGGACTTTGCTTGATGGAACTCAGTTCGATTCCAGCCGTG
genomic: CAAGGAGGGTGAAGGCTGGGACACCCCTGAAAATGGCGATGAAGTTGAAGgtactcatcc ... tgattttcagTTCATTACACTGGGACTTTGCTTGATGGAACTCAGTTCGATTCCAGCCGTG
EST: gi|37187620|gb|CF606973.1|CF606973
EST:     CAAGGAGGGTGAAGGCTGGGACACCCCTGAAAATGGCGATGAAGTTGAAG                         TTCATTACACTGGGACTTTGCTTGATGGAACTCAGTTCGATTCCAGCCGTG
genomic: CAAGGAGGGTGAAGGCTGGGACACCCCTGAAAATGGCGATGAAGTTGAAGgtactcatcc ... tgattttcagTTCATTACACTGGGACTTTGCTTGATGGAACTCAGTTCGATTCCAGCCGTG
EST: gi|71861038|gb|DT010093.1|DT010093
EST:     CAAGGAGGGTGAAGGCTGGGACACCCCTGAAAATGGCGATGAAGTTGAAG                         TTCATTACACTGGGACTTTGCTTGATGGAACTCAGTTCGATTCCAGCCGTG
genomic: CAAGGAGGGTGAAGGCTGGGACACCCCTGAAAATGGCGATGAAGTTGAAGgtactcatcc ... tgattttcagTTCATTACACTGGGACTTTGCTTGATGGAACTCAGTTCGATTCCAGCCGTG
EST: gi|110699844|gb|EE077215.1|EE077215
EST:     CAAGGAGGGTGAAGGCTGGGACACCCCTGAAAATGGCGATGAAGTTGAAG                         TTCATTACACTGGGACTTTGCTTGATGGAACTCAGTTCGATTCCAGCCGTG
genomic: CAAGGAGGGTGAAGGCTGGGACACCCCTGAAAATGGCGATGAAGTTGAAGgtactcatcc ... tgattttcagTTCATTACACTGGGACTTTGCTTGATGGAACTCAGTTCGATTCCAGCCGTG
EST: gi|110365463|gb|EC928491.1|EC928491
EST:     CAAGGAGGGTGAAGGCTGGGACACCCCTGAAAATGGCGATGAAGTTGAAG                         TTCATTACACTGGGACTTTGCTTGATGGAACTCAGTTCGATTCCAGCCGTG
genomic: CAAGGAGGGTGAAGGCTGGGACACCCCTGAAAATGGCGATGAAGTTGAAGgtactcatcc ... tgattttcagTTCATTACACTGGGACTTTGCTTGATGGAACTCAGTTCGATTCCAGCCGTG
EST: gi|34546797|gb|CF515029.1|CF515029
EST:     CAAGGAGGGTGAAGGCTGGGACACCCCTGAAAATGGCGATGAAGTTGAAG                         TTCATTACACTGGGACTTTGCTTGATGGAACTCAGTTCGATTCCAGCCGTG
genomic: CAAGGAGGGTGAAGGCTGGGACACCCCTGAAAATGGCGATGAAGTTGAAGgtactcatcc ... tgattttcagTTCATTACACTGGGACTTTGCTTGATGGAACTCAGTTCGATTCCAGCCGTG
EST: gi|71858420|gb|DT007475.1|DT007475
EST:     CAAGGAGGGTGAAGGCTGGGACACCCCTGAAAATGGCGATGAAGTTGAAG                         TTCATTACACTGGGACTTTGCTTGATGGAACTCAGTTCGATTCCAGCCGTG
genomic: CAAGGAGGGTGAAGGCTGGGACACCCCTGAAAATGGCGATGAAGTTGAAGgtactcatcc ... tgattttcagTTCATTACACTGGGACTTTGCTTGATGGAACTCAGTTCGATTCCAGCCGTG
EST: gi|352777415|gb|FQ474049.1|FQ474049
EST:     CAAGGAGGGTGAAGGCTGGGACACCCCTGAAAATGGCGATGAAGTTGAAG                         TTCATTACACTGGGACTTTGCTTGATGGAACTCAGTTCGATTCCAGCCGTG
genomic: CAAGGAGGGTGAAGGCTGGGACACCCCTGAAAATGGCGATGAAGTTGAAGgtactcatcc ... tgattttcagTTCATTACACTGGGACTTTGCTTGATGGAACTCAGTTCGATTCCAGCCGTG
EST: gi|34548843|gb|CF517075.1|CF517075
EST:     CAAGGAGGGTGAAGGCTGGGACACCCCTGAAAATGGCGATGAAGTTGAAG                         TTCATTACACTGGGACTTTGCTTGATGGAACTCAGTTCGATTCCAGCCGTG
genomic: CAAGGAGGGTGAAGGCTGGGACACCCCTGAAAATGGCGATGAAGTTGAAGgtactcatcc ... tgattttcagTTCATTACACTGGGACTTTGCTTGATGGAACTCAGTTCGATTCCAGCCGTG
EST: gi|110700523|gb|EE078663.1|EE078663
EST:     CAAGGAGGGTGAAGGCTGGGACACCCCTGAAAATGGCGATGAAGTTGAAG                         TTCATTACACTGGGACTTTGCTTGATGGAACTCAGTTCGATTCCAGCCGTG
genomic: CAAGGAGGGTGAAGGCTGGGACACCCCTGAAAATGGCGATGAAGTTGAAGgtactcatcc ... tgattttcagTTCATTACACTGGGACTTTGCTTGATGGAACTCAGTTCGATTCCAGCCGTG
EST: gi|352782187|gb|FQ470089.1|FQ470089
EST:     CAAGGAGGGTGAAGGCTGGGACACCCCTGAAAATGGCGATGAAGTTGAAG                         TTCATTACACTGGGACTTTGCTTGATGGAACTCAGTTCGATTCCAGCCGTG
genomic: CAAGGAGGGTGAAGGCTGGGACACCCCTGAAAATGGCGATGAAGTTGAAGgtactcatcc ... tgattttcagTTCATTACACTGGGACTTTGCTTGATGGAACTCAGTTCGATTCCAGCCGTG
EST: gi|352772292|gb|FQ469817.1|FQ469817
EST:     CAAGGAGGGTGAAGGCTGGGACACCCCTGAAAATGGCGATGAAGTTGAAG                         TTCATTACACTGGGACTTTGCTTGATGGAACTCAGTTCGATTCCAGCCGTG
genomic: CAAGGAGGGTGAAGGCTGGGACACCCCTGAAAATGGCGATGAAGTTGAAGgtactcatcc ... tgattttcagTTCATTACACTGGGACTTTGCTTGATGGAACTCAGTTCGATTCCAGCCGTG
EST: gi|161720136|gb|FC065476.1|FC065476
EST:     CAAGGAGGGTGAAGGCTGGGACACCCCTGAAAATGGCGATGAAGTTGAAG                         TTCATTACACTGGGACTTTGCTTGATGGAACTCAGTTCGATTCCAGCCGTG
genomic: CAAGGAGGGTGAAGGCTGGGACACCCCTGAAAATGGCGATGAAGTTGAAGgtactcatcc ... tgattttcagTTCATTACACTGGGACTTTGCTTGATGGAACTCAGTTCGATTCCAGCCGTG
EST: gi|71857966|gb|DT007021.1|DT007021
EST:     CAAGGAGGGTGAAGGCTGGGACACCCCTGAAAATGGCGATGAAGTTGAAG                         TTCATTACACTGGGACTTTGCTTGATGGAACTCAGTTCGATTCCAGCCGTG
genomic: CAAGGAGGGTGAAGGCTGGGACACCCCTGAAAATGGCGATGAAGTTGAAGgtactcatcc ... tgattttcagTTCATTACACTGGGACTTTGCTTGATGGAACTCAGTTCGATTCCAGCCGTG
EST: gi|34550935|gb|CF519143.1|CF519143
EST:     CAAGGAGGGTGAAGGCTGGGACACCCCTGAAAATGGCGATGAAGTTGAAG                         TTCATTACACTGGGACTTTGCTTGATGGAACTCAGTTCGATTCCAGCCGTG
genomic: CAAGGAGGGTGAAGGCTGGGACACCCCTGAAAATGGCGATGAAGTTGAAGgtactcatcc ... tgattttcagTTCATTACACTGGGACTTTGCTTGATGGAACTCAGTTCGATTCCAGCCGTG
EST: gi|161718283|gb|FC066965.1|FC066965
EST:     CAAGGAGGGTGAAGGCTGGGACACCCCTGAAAATGGCGATGAAGTTGAAG                         TTCATTACACTGGGACTTTGCTTGATGGAACTCAGTTCGATTCCAGCCGTG
genomic: CAAGGAGGGTGAAGGCTGGGACACCCCTGAAAATGGCGATGAAGTTGAAGgtactcatcc ... tgattttcagTTCATTACACTGGGACTTTGCTTGATGGAACTCAGTTCGATTCCAGCCGTG
EST: gi|71861258|gb|DT010313.1|DT010313
EST:     CAAGGAGGGTGAAGGCTGGGACACCCCTGAAAATGGCGATGAAGTTGAAG                         TTCATTACACTGGGACTTTGCTTGATGGAACTCAGTTCGATTCCAGCCGTG
genomic: CAAGGAGGGTGAAGGCTGGGACACCCCTGAAAATGGCGATGAAGTTGAAGgtactcatcc ... tgattttcagTTCATTACACTGGGACTTTGCTTGATGGAACTCAGTTCGATTCCAGCCGTG
EST: gi|71857125|gb|DT006180.1|DT006180
EST:     CAAGGAGGGTGAAGGCTGGGACACCCCTGAAAATGGCGATGAAGTTGAAG                         TTCATTACACTGGGACTTTGCTTGATGGAACTCAGTTCGATTCCAGCCGTG
genomic: CAAGGAGGGTGAAGGCTGGGACACCCCTGAAAATGGCGATGAAGTTGAAGgtactcatcc ... tgattttcagTTCATTACACTGGGACTTTGCTTGATGGAACTCAGTTCGATTCCAGCCGTG
EST: gi|110699434|gb|EE076427.1|EE076427
EST:     CAAGGAGGGTGAAGGCTGGGACACCCCTGAAAATGGCGATGAAGTTGAAG                         TTCATTACACTGGGACTTTGCTTGATGGAACTCAGTTCGATTCCAGCCGTG
genomic: CAAGGAGGGTGAAGGCTGGGACACCCCTGAAAATGGCGATGAAGTTGAAGgtactcatcc ... tgattttcagTTCATTACACTGGGACTTTGCTTGATGGAACTCAGTTCGATTCCAGCCGTG
EST: gi|352769557|gb|FQ468485.1|FQ468485
EST:     CAAGGAGGGTGAAGGCTGGGACACCCCTGAAAATGGCGATGAAGTTGAAG                         TTCATTACACTGGGACTTTGCTTGATGGAACTCAGTTCGATTCCAGCCGTG
genomic: CAAGGAGGGTGAAGGCTGGGACACCCCTGAAAATGGCGATGAAGTTGAAGgtactcatcc ... tgattttcagTTCATTACACTGGGACTTTGCTTGATGGAACTCAGTTCGATTCCAGCCGTG
EST: gi|37184242|gb|CF603596.1|CF603596
EST:     CAAGGAGGGTGAAGGCTGGGACACCCCTGAAAATGGCGATGAAGTTGAAG                         TTCATTACACTGGGACTTTGCTTGATGGAACTCAGTTCGATTCCAGCCGTG
genomic: CAAGGAGGGTGAAGGCTGGGACACCCCTGAAAATGGCGATGAAGTTGAAGgtactcatcc ... tgattttcagTTCATTACACTGGGACTTTGCTTGATGGAACTCAGTTCGATTCCAGCCGTG
EST: gi|34546618|gb|CF514850.1|CF514850
EST:     CAAGGAGGGTGAAGGCTGGGACACCCCTGAAAATGGCGATGAAGTTGAAG                         TTCATTACACTGGGACTTTGCTTGATGGAACTCAGTTCGATTCCAGCCGTG
genomic: CAAGGAGGGTGAAGGCTGGGACACCCCTGAAAATGGCGATGAAGTTGAAGgtactcatcc ... tgattttcagTTCATTACACTGGGACTTTGCTTGATGGAACTCAGTTCGATTCCAGCCGTG
EST: gi|34550055|gb|CF518287.1|CF518287
EST:     CAAGGAGGGTGAAGGCTGGGACACCCCTGAAAATGGCGATGAAGTTGAAG                         TTCATTACACTGGGACTTTGCTTGATGGAACTCAGTTCGATTCCAGCCGTG
genomic: CAAGGAGGGTGAAGGCTGGGACACCCCTGAAAATGGCGATGAAGTTGAAGgtactcatcc ... tgattttcagTTCATTACACTGGGACTTTGCTTGATGGAACTCAGTTCGATTCCAGCCGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttttttactatgctgcaattattggattgattttgagtttttgttgattttcagTTCATTACACTGGGACTTTGCTTGATGGAACTCAGTTCGATTCCAGCCGTGATAGGGGGACTCCGTTCAAGTTCACCCTTGGCCAAG
                                          tgttgat  putative branch site (score: 4)
                                      tttttgtt  CT-rich tract
                                      tttttgttgatttt  TA-rich tract