1 5' 3' | 2 5' 3' | 3 5' 3' |
gtatgagttcatttgtaaaatgtatgtacgtttttctattagcttcttcattatacttatatctgcttgtgtttcagGGAAGCCTGTGAGACTGCTCTTAAAGAAAAACATCTATTTGATAGTTCTGAACTGGAAGGCTTCTTAGATGAGATTCCTAGATCCAATTTGGAACAGTTA
species | Vitis vinifera |
transcript | Vv00s0642g00010.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ATGGGAACTGCAAACTTTGAA GGAAGCCTGTGAGACTGCTCTTAAAGAAAAACATCTATTTGATAGTTCTGAEST: gi|349821463|gb|FQ411084.1|FQ411084
genomic: ATGGGAACTGCAAACTTTGAAgtatgagttc ... tgtgtttcagGGAAGCCTGTGAGACTGCTCTTAAAGAAAAACATCTATTTGATAGTTCTGA
EST: GAGTGGGAGCACGAATCTACCAAGCGCTCATGGGAACTGCAAACTTTGAA GGAAGCCTGTGAGACTGCTCTTAAAGAAAAACATCTATTTGATAGTTCTGAEST: gi|110394861|gb|EC960232.1|EC960232
genomic: GAGTGGGAGCACGAATCTACCAAGCGCTCATGGGAACTGCAAACTTTGAAgtatgagttc ... tgtgtttcagGGAAGCCTGTGAGACTGCTCTTAAAGAAAAACATCTATTTGATAGTTCTGA
EST: GAGTGGGAGCACGAATCTACCAAGCGCTCATGGGAACTGCAAACTTTGAA GGAAGCCTGTGAGACTGCTCTTAAAGAAAAACATCTATTTGATAGTTCTGA
genomic: GAGTGGGAGCACGAATCTACCAAGCGCTCATGGGAACTGCAAACTTTGAAgtatgagttc ... tgtgtttcagGGAAGCCTGTGAGACTGCTCTTAAAGAAAAACATCTATTTGATAGTTCTGA
tatgtacgtttttctattagcttcttcattatacttatatctgcttgtgtttcagGGAAGCCTGTGAGACTGCTCTTAAAGAAAAACATCTATTTGATAGTTCTGAACTGGAAGGCTTCTTAGATGAGATTCCTAGATCCAATTTGGAACAGTTA
tctgctt CT-rich tract
ttcattatacttatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgagttcatttgtaaaatgtatgtacgtttttctattagcttcttcattatacttatatctgcttgtgtttcagGGAAGCCTGTGAGACTGCTCTTAAAGAAAAACATCTATTTGATAGTTCTGAACTGGAAGGCTTCTTAGATGAGATTCCTAGATCCAATTTGGAACAGTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG