Sequence
atgc intronic sequence ATGC exonic sequence...aaatctcatcgacatctctggagccaccagaagttatatttccatgtcaggcagctgtcgtatattcatattctaataatatacttttgacccattacagGCCCTTGCGTGGTTTTGATCTTGTTAAGGATAGAGACACAGGAAACTCTAAGGGATATGGTTTCTGTGTTTATCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0561g00030.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: PP1S79_75V6.1 (Physcomitrella patens), 3'ss of exon 11
---------------------------------------------aaatctcatcgacatctctg--gagccaccag------aagttatatttccatg-----tcaggcagctgtcgtatattcatattctaataatatacttttgacccatta----cagGCCCTTGCGTGGTTTTGATCTTGTTAAGGATAGAGACACAGGAAACTCTAAGGGATATGGTTTCTGTGTTTATCAG
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gtaagaaccaatctctttgtaaaatgcgaattttttataagatttacgttgattcggaatgtttgtagggttaggaacgaagtaaattctattactgaacttgatctgaccctttttttttttttttttttttttttttttttttttttttctgaaccttagGCCTTTGCGAGGTTTTGATCTTGTCAAAGACCGGGACACTGGGAACTCTAAAGGATATGGTTTCTGTGTTTATCAG
upper sequence: Vv00s0561g00030.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: PP1S58_254V6.1 (Physcomitrella patens), 3'ss of exon 12
----------------------------------aaatctcatcgacatctctggagccaccagaagttata---tttcc--atgtcaggcagctgtcgtatattc-----atattctaat--aatatact-tttgacccattacagGCCCTTGCGTGGTTTTGATCTTGTTAAGGATAGAGACACAGGAAACTCTAAGGGATATGGTTTCTGTGTTTATCAG
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gtaaggaacggcttacatttgaaacatgggcatgaaatctatacaaccatttcgttgatgttgaatgctttaaggttttcgaacgtgataaagctatccaccaccttagcgaggtttttatctaatttaaggtttcttgaactccagGCCTTTGCGAGGTTTTGATCTTGTCAAAGACCGGGACACAGGCAACTCTAAAGGATATGGTTTCTGTGTATATCAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtcaggcagctgtcgtatattcatattctaataatatacttttgacccattacagGCCCTTGCGTGGTTTTGATCTTGTTAAGGATAGAGACACAGGAAACTCTAAGGGATATGGTTTCTGTGTTTATCAG
tatattcatattctaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aaatctcatcgacatctctggagccaccagaagttatatttccatgtcaggcagctgtcgtatattcatattctaataatatacttttgacccattacagGCCCTTGCGTGGTTTTGATCTTGTTAAGGATAGAGACACAGGAAACTCTAAGGGATATGGTTTCTGTGTTTATCAG
- - - - - - catctct
- - - - - - - - - - - gccacca
- - - - - - - - - - - - - - - - - - - - -ccatgtc
- - - - - - - - - - - - - - - - - - - - - - - - - -cagctgt