Sequence
atgc intronic sequence ATGC exonic sequence...atatcaagtgtttttgttcatgattcatattagcccctgtttttctttttctttctcttgttatttgaaatgatgctgactcagttttcgcgtcactaagGTGGATATGTCCCAGCACCAAGGGGATGAGATGGATTATGCGGCAGATGATTATGAAATGGCAGAAGTAGATGATGATATGTACTTCCGTGGTAGAGTAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0568g00010.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA17G00740.3 (Glycine max), 3'ss of exon 1
atatcaagtgtttttgttcatgattcatat-tagcccctgtttttctttttctttctcttgttatttgaaat--gatgctgactcagttttcgcgtcactaagGTGG--ATATGTCCCAGCACCAAGGGGATGAGATGGATTATGCGGCAGATGATTATGAAATGGCAGAAGTAGATGATGATATGTACTTCCGTGGTAGAGTAA--
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------gaaacttcagttc-tgcttcttctgcagtttcaaggttgtttgtttattttctcacgaggtgaaattgattgatgtgtttgttcctctttttatggagcagCAACATGGCTCAACAACAGGAGGACGAAATGGAGTATGTTGCTGATGATAATGAAATGGCGGAAGTAGAAGATGACATGTATTTCCGTGGTAGAGTGTTT
upper sequence: Vv00s0568g00010.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA17G00740.2 (Glycine max), 3'ss of exon 1
atatcaagtgtttttgttcatgattcatat-tagcccctgtttttctttttctttctcttgttatttgaaat--gatgctgactcagttttcgcgtcactaagGTGG--ATATGTCCCAGCACCAAGGGGATGAGATGGATTATGCGGCAGATGATTATGAAATGGCAGAAGTAGATGATGATATGTACTTCCGTGGTAGAGTAA
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--attgaa-acttcagttc-tgcttcttctgcagtttcaaggttgtttgtttattttctcacgaggtgaaattgattgatgtgtttgttcctctttttatggagCAGCAACATGGCTCAACAACAGGAGGACGAAATGGAGTATGTTGCTGATGATAATGAAATGGCGGAAGTAGAAGATGACATGTATTTCCGTGGTAGAGTG-
upper sequence: Vv00s0568g00010.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA09G02070.1 (Glycine max), 3'ss of exon 1
---------------------------atatcaagtgtttttgttcatg-attca--tattagcccctgtt---tttctttttctttctcttgttatttgaaatgatgctgactcagttttcgcgtcactaagGTGGATATGTCCCAGCACCAAGGGGATGAGATGGATTATGCGGCAGATGATTATGAAATGGCAGAAGTAGATGATGATATGTACTTCCGTGGTAGAGTAA
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cttagtacctgcagtgtgtaggtcatagaatttgatgttcattttcttgcactcaattattatcttcaactcaatttagcatactccctttatgaactagATATCAAG-TATCAAAATCTAAACGGCATCA--GCAAACATGTCTCAACACCATGGTGATGAAATGGAGTATGCGGCAGATGATAATGAAATGGCAGAGGTAG------------------------------
upper sequence: Vv00s0568g00010.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA15G12980.1 (Glycine max), 3'ss of exon 2
---------------------------atatcaagtgtttttgttcatgattcatattagcccctgtttttctttttctttctcttgttatttgaaat-gatgctgactcagttttcgcgtcactaagGTGGATATGTCCCAGCACCAAGGGGATGAGATGGATTATGCGGCAGATGATTATGAAATGGCAGAAGTAGATGATGATATGTACTTCCGTGGTAGAGTAA
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cttagtacctgcggtgtgtaggtcatagaatttgatgtttattttcttgcactcagttattatcttctactcattttagcatactgcctttatgaactagATATCGAGT-ATCAAAAACGGCATCTGGA-AAACATGTCTCAATACCATGGTGATGAAATGGAGTATGCGGCAGACGATAATGAAATGGCAGAGGTAGAAGA-------------------------- atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttttctttctcttgttatttgaaatgatgctgactcagttttcgcgtcactaagGTGGATATGTCCCAGCACCAAGGGGATGAGATGGATTATGCGGCAGATGATTATGAAATGGCAGAAGTAGATGATGATATGTACTTCCGTGGTAGAGTAA
tgctgac putative branch site (score: 2)
ttttcgc putative PPT
ttgttatttgaaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atatcaagtgtttttgttcatgattcatattagcccctgtttttctttttctttctcttgttatttgaaatgatgctgactcagttttcgcgtcactaagGTGGATATGTCCCAGCACCAAGGGGATGAGATGGATTATGCGGCAGATGATTATGAAATGGCAGAAGTAGATGATGATATGTACTTCCGTGGTAGAGTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - caagtgt
- - - - - - - -gttcatg
- - - - - - - - - - - - - - - - -cccctgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gatgctg