1 5' 3' | 2 5' 3' | 3 5' 3' |
gtactggagctttaagcttgtatacacaggttggggtcattttcttctggtgttatactaacaattttatttcttacagTTGCTGTACAGGAGGTACAGTGGAAATTTCCTTGTAAATCTCTTGGGCAAGTGGAAGGAATCTGAATATTCAGGCGGTCAATACATCCCTGTTGGTGGTC
species | Vitis vinifera |
transcript | Vv00s0551g00030.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCATCATTCTACAGTCTGCTCTTGTTACCAACCTATACTTTATATCCCAG TTGCTGTACAGGAGGTACAGTGGAAATTTCCTGGTAAATCTCTTGGGCAAGEST: gi|110693126|gb|EE069083.1|EE069083
genomic: CCATCATTCTACAGTCTGCTCTTGTTACCAACCTATACTTTATATCCCAGgtactggagc ... tttcttacagTTGCTGTACAGGAGGTACAGTGGAAATTTCCTTGTAAATCTCTTGGGCAAG
EST: CCATCATTCTACAGTCTGCTCTTGTTACCAACCTATACTTTATATCCCAG TTGCTGTACAGGAGGTACAGTGGAAATTTCCTGGTAAATCTCTTGGGCAAGEST: gi|30128076|gb|CB913415.1|CB913415
genomic: CCATCATTCTACAGTCTGCTCTTGTTACCAACCTATACTTTATATCCCAGgtactggagc ... tttcttacagTTGCTGTACAGGAGGTACAGTGGAAATTTCCTTGTAAATCTCTTGGGCAAG
EST: CCATCATTCTACAGTCTGCTCTTGTTACCAACCTATACTTTATATCCCAG TTGCTGTACAGGAGGTACAGTGGAAATTTCCTGGTAAATCTCTTGGGCAAGEST: gi|30127111|gb|CB912450.1|CB912450
genomic: CCATCATTCTACAGTCTGCTCTTGTTACCAACCTATACTTTATATCCCAGgtactggagc ... tttcttacagTTGCTGTACAGGAGGTACAGTGGAAATTTCCTTGTAAATCTCTTGGGCAAG
EST: CCATCATTCTACAGTCTGCTCTTGTTACCAACCTATACTTTATATCCCAG TTGCTGTACAGGAGGTACAGTGGAAATTTCCTGGTAAATCTCTTGGGCAAGEST: gi|77580759|gb|DV219287.1|DV219287
genomic: CCATCATTCTACAGTCTGCTCTTGTTACCAACCTATACTTTATATCCCAGgtactggagc ... tttcttacagTTGCTGTACAGGAGGTACAGTGGAAATTTCCTTGTAAATCTCTTGGGCAAG
EST: CCATCATTCTACAGTCTGCTCTTGTTACCAACCTATACTTTATATCCCAG TTGCTGTACAGGAGGTACAGTGGAAATTTCCTTGTAAATCTCTTGGGCAAGEST: gi|110369453|gb|EC933613.1|EC933613
genomic: CCATCATTCTACAGTCTGCTCTTGTTACCAACCTATACTTTATATCCCAGgtactggagc ... tttcttacagTTGCTGTACAGGAGGTACAGTGGAAATTTCCTTGTAAATCTCTTGGGCAAG
EST: CCATCATTCTACAGTCTGCTCTTGTTACCAACCTATACTTTATATCCCAG TTGCTGTACAGGAGGTACAGTGGAAATTTCCTTGTAAATCTCTTGGGCAAGEST: gi|34549150|gb|CF517382.1|CF517382
genomic: CCATCATTCTACAGTCTGCTCTTGTTACCAACCTATACTTTATATCCCAGgtactggagc ... tttcttacagTTGCTGTACAGGAGGTACAGTGGAAATTTCCTTGTAAATCTCTTGGGCAAG
EST: TCATTCTACAGTCTGCTCTTGTTANGATCCTATACTTTATATCCCAG TTGCTGTACAGGAGGTACAGTGGAAATTTCCTTGTAAATCTCTTGGGCAAG
genomic: TCATTCTACAGTCTGCTCTTGTTACCAACCTATACTTTATATCCCAGgtactggagc ... tttcttacagTTGCTGTACAGGAGGTACAGTGGAAATTTCCTTGTAAATCTCTTGGGCAAG
cacaggttggggtcattttcttctggtgttatactaacaattttatttcttacagTTGCTGTACAGGAGGTACAGTGGAAATTTCCTTGTAAATCTCTTGGGCAAGTGGAAGGAATCTGAATATTCAGGCGGTCAATACATCCCTGTTGGTGGTC
tactaac putative branch site (score: 0)
ttttatttctt putative PPT
ttatactaacaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactggagctttaagcttgtatacacaggttggggtcattttcttctggtgttatactaacaattttatttcttacagTTGCTGTACAGGAGGTACAGTGGAAATTTCCTTGTAAATCTCTTGGGCAAGTGGAAGGAATCTGAATATTCAGGCGGTCAATACATCCCTGTTGGTGGTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG