1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...taaacttgtgctgtgttactatattttggttattttcatcttttactttagtgctgcaaatgttgtcaactccagtcttacattttactgctgatatcagGATGGAAGGCGAGTTCACATAATTGAAAGAGACTTGACGGAGCCTGACAGAATTGTTGGTGAATTGCTGCAGCCAGGGGGGTACCTGAAACTAATTGAAT
species | Vitis vinifera |
transcript | Vv00s0525g00020.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTGTCGGCGCCGGAGTTGCCGGTTCCGCCCTCGCCCACACTCTCGGCAAG GATGGAAGGCGAGCTCACATAATTGAAAGAGACTTGACGGAGCCTGACAGAEST: gi|110357257|gb|EC920671.1|EC920671
genomic: TTGTCGGCGCCGGAGTTGCCGGTTCGGCCCTCGCCCACACTCTCGGCAAGgtgacttttt ... ctgatatcagGATGGAAGGCGAGTTCACATAATTGAAAGAGACTTGACGGAGCCTGACAGA
EST: TTGTCGGCGCCGGAGTTGCCGGTTCCGCCCTCGCCCACACTCTCGGCAAG GATGGAAGGCGAGTTCACATAATTGAAAGAGACTTGACGGAGCCTGACAGAEST: gi|161718467|gb|FC064799.1|FC064799
genomic: TTGTCGGCGCCGGAGTTGCCGGTTCGGCCCTCGCCCACACTCTCGGCAAGgtgacttttt ... ctgatatcagGATGGAAGGCGAGTTCACATAATTGAAAGAGACTTGACGGAGCCTGACAGA
EST: TTGTCGGCGCCGGAGTTGCCGGTTCCGCCCTCGCCCACACTCTCGGCAAG GATGGAAGGCGAGTTCACATAATTGAAAGAGACTTGACGGAGCCTGACAGA
genomic: TTGTCGGCGCCGGAGTTGCCGGTTCGGCCCTCGCCCACACTCTCGGCAAGgtgacttttt ... ctgatatcagGATGGAAGGCGAGTTCACATAATTGAAAGAGACTTGACGGAGCCTGACAGA
ctttagtgctgcaaatgttgtcaactccagtcttacattttactgctgatatcagGATGGAAGGCGAGTTCACATAATTGAAAGAGACTTGACGGAGCCTGACAGAATTGTTGGTGAATTGCTGCAGCCAGGGGGGTACCTGAAACTAATTGAAT
tgctgat putative branch site (score: 3)
ttacatttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taaacttgtgctgtgttactatattttggttattttcatcttttactttagtgctgcaaatgttgtcaactccagtcttacattttactgctgatatcagGATGGAAGGCGAGTTCACATAATTGAAAGAGACTTGACGGAGCCTGACAGAATTGTTGGTGAATTGCTGCAGCCAGGGGGGTACCTGAAACTAATTGAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - cttgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - -ctgcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caactcc