Sequence
atgc intronic sequence ATGC exonic sequence...taaacaaattcgggaagttccttattttttatgtggttactgctttttatcaggaattcaatgctggactttttgattatctaattgcaactgatggcagCCAACCAAAAGAGAAGGAGCAAGCTGACGAGGGCAGTCAAATTGAGCCAAGGAAGTCCAGAAAGCACTCCAAGCAAAAATTGGATTCTGAATTTGGAGTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0525g00010.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA20G37930.1 (Glycine max), 3'ss of exon 2
----------------------------------------------------------------------------------------------------taaacaaattcgggaagttccttattttttatgtggtt-----actgctttttatcaggaattcaatgctggactttttgattatctaattgcaactgatggcagCCAACCAAAAGAGAAGGAGCAAGCTGACGAGGGCAGTCAAATTGAGCCAAGGAAGTCCAGAAAGCACTCCAAGCAAAAATTGGATTCTGAATTTGGAGTG
| ||| | ||| ||| || | | ||| || || ||||||||||||||||||||| || || |||||||||||||||||||| ||| ||||| |||| || ||||| ||| ||| ||| | ||| || |||
gtatgcaatgttattcagttccttctttcatttggtactacagctgctaagactgttctaacttaagttttcttcaaaaagtgatttttattatcaattcattataaagtttggatcttcattttctcacatgattttgacaaacccgtttttatcagGAATTCAATGCGGGCCTGTTTGATTATCTAATTGCAACAGATCTTAGCCAGTCAAAGGAAAAGGATGAAGTGCCTAAGGAAAGTAATGTTGGATCATGGA-----------------------------------------------
upper sequence: Vv00s0525g00010.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA10G29360.1 (Glycine max), 3'ss of exon 8
---------------------------------------------------------------------------------------------------------------------------------taaacaaattcgggaagttccttattttttatgtggtt-----actgctttttatcaggaattcaatgctggactttttgattatctaattgcaactgatggcagCCAACCAAAAGAGAAGGAGCAAGCTGACGAGGGCAGTCAAATTGAGCCAAGGAAGTCCAGAAAGCACTCCAAGCAAAAATTGGATTCTGAATTTGGAGTG
| || || ||| ||| || | | ||| || || ||||||||||||||||||||| || || |||||||||||||||||||| ||| ||||| |||| || ||||| ||| ||| ||| ||| || |||
gtatgcaatgttatccagttccttctttcattgctaagacttttctacttaacctggtgctacagcatttcttgccaactaagcataagaaattcaagttttcttcaaaaagtgatttattatcaattcattataatttttggatcttcattttctcacatgattttgacaaacctatttttatcagGAATTCAATGCGGGCCTGTTTGATTATCTAATTGCAACAGATCTTAGCCAGTCAAAGGAAAAGGATGAAGTGCCTAAGGAAAGTATTGTTGGATCACGGA----------------------------------------------- atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttatcaggaattcaatgctggactttttgattatctaattgcaactgatggcagCCAACCAAAAGAGAAGGAGCAAGCTGACGAGGGCAGTCAAATTGAGCCAAGGAAGTCCAGAAAGCACTCCAAGCAAAAATTGGATTCTGAATTTGGAGTG
aactgat putative branch site (score: 3)
tttttgattatctaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
taaacaaattcgggaagttccttattttttatgtggttactgctttttatcaggaattcaatgctggactttttgattatctaattgcaactgatggcagCCAACCAAAAGAGAAGGAGCAAGCTGACGAGGGCAGTCAAATTGAGCCAAGGAAGTCCAGAAAGCACTCCAAGCAAAAATTGGATTCTGAATTTGGAGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
-aaacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - caatgct