Sequence
atgc intronic sequence ATGC exonic sequence...ttgagccttcctcattaagtgtgtacatgtatttgtatggggcatctgagcaaatgcatgaggctatgaattgtactgaatcatcagctctttaatgcagAGATATGACCCTGACCCAGCAGCAAAGGCAGCTGCAGCGACTGTCCTGGCATCAAAGTTAGGCTCAGATTCAGGCTTAAAAGTGTATGTAGGAGATGAAC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0432g00020.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT4G31080.1 (Arabidopsis thaliana), 3'ss of exon 4
----ttgagccttcctcattaagtgtgtaca-tgtat-ttgtatggggcatctgagcaaatgcatgaggctatgaattgtactgaatcatcagctctttaatgcagAGATATGACCCTGACCCAGCAGCAAAGGCAGCTGCAGCGACTGTCCTGGCATCAAAGTTAGGCTCAGATTCAGGCTTAAAAGTGTATGTAGGAGATGAAC
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gtggcatagccatgcaacgaaagagagatcaatgtttgccgacttgaagaggttaactactgcatgtagagctggtgctaacagaattgt------tttgatgcagAGATATGACCCGGACCCAGCTGCAAAGGCAGCTGCCGCAACTGTCCTGGCATCCAAATTGGGTGCCGATTCAGGCTTGAAAGTATATTTAGGAGATGAAT
upper sequence: Vv00s0432g00020.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT2G24330.1 (Arabidopsis thaliana), 3'ss of exon 3
-----ttgagccttcctcattaagtgtgtacatgtatttgt-atggggcatctgagcaaatgcatgaggctatgaattgtactgaatcatcagctctttaatg-cagAGATATGACCCTGACCCAGCAGCAAAGGCAGCTGCAGCGACTGTCCTGGCATCAAAGTTAGGCTCAGATTCAGGCTTAAAAGTGTATGTAGGAGATGAAC
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aagaattgaa---ttgctgttatatcttaacggatacttgttattgtgggttttatca--ctattgagactggaacttgttataa--catgagctattttgtatcagAGGTATGACCCTGACCCAGCTGCAAAGGCGGCTGCTGCAACTGTTCTGGCATCCAAGTTGGGTGCTGAGTCAGGCTTGAAAGTATTTGTAGGAGATGAAT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctgagcaaatgcatgaggctatgaattgtactgaatcatcagctctttaatgcagAGATATGACCCTGACCCAGCAGCAAAGGCAGCTGCAGCGACTGTCCTGGCATCAAAGTTAGGCTCAGATTCAGGCTTAAAAGTGTATGTAGGAGATGAAC
ctttaat putative branch site (score: 4)
ctcttt CT-rich tract
tatgaatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttgagccttcctcattaagtgtgtacatgtatttgtatggggcatctgagcaaatgcatgaggctatgaattgtactgaatcatcagctctttaatgcagAGATATGACCCTGACCCAGCAGCAAAGGCAGCTGCAGCGACTGTCCTGGCATCAAAGTTAGGCTCAGATTCAGGCTTAAAAGTGTATGTAGGAGATGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - -ccttcct
- - - - - - - - - - - gtacatg
- - - - - - - - - - - - - - - - -tgtatgg
- - - - - - - - - - - - - - - - - - - - -gcatctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatgag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctatgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catcagc