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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtggacttctggtacaaaagatggcaaattttgtttcttttttccttttggatgcacaactgttcctgtatgaccactgagtaacacaattcctgaaccatttggaaatgtagGTCAAAAGCATGAGCCACTAAGCTGGGATTCAAGAGTTTCCATAGCTCTCGATGTTGCAAGGGGAATGGAATATCTACATTATGGG

Basic information

species Vitis vinifera
transcript Vv00s0361g00050.t01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0361g00050.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA08G06620.1 (Glycine max), 3'ss of exon 3
gtggacttctggtacaaaagatggcaaattttgtttcttttttccttttggatgcacaactgttcctgtatgaccactgagtaac-acaattcctgaaccatttggaaatgtagGTCAAAAGCATGAGCCACTAAGCTGGGATTCAAGAGTTTCCATAGCTCTCGATGTTGCAAGGGGAATGGAATATCTACATTATGGG
 |     |  |  ||| ||  |  || |||||  ||||           | ||    |  ||| |||   ||  | ||   ||   || |||| |     |  ||   || | ||  |||| ||  ||||| | ||||||||||  ||  ||  |||||| || ||||||||||| ||| |||||||||||||| |||||
-taattctaggaaacacaaattttcatatttt-cttctagagcttagaagaatttttacttgtaccttcttgttctctatttacttaccattctttgtgtagCTG---ATTTGGGAAAAAATCACAAGCCATTGAGCTGGGATTTGAGGCTTAGCATAGCGCTAGATGTTGCAAGAGGACTGGAATATCTACATCATGGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actgttcctgtatgaccactgagtaacacaattcctgaaccatttggaaatgtagGTCAAAAGCATGAGCCACTAAGCTGGGATTCAAGAGTTTCCATAGCTCTCGATGTTGCAAGGGGAATGGAATATCTACATTATGGG
                    gagtaac  putative branch site (score: 2)
                                               aaatgta  TA-rich tract