1 5' 3' | 2 5' 3' | 3 5' 3' |
gtatgctcttcttccggcatttctgcattgattcttttgtttttctattctgttaggttttgtgttcaaattttttctgttttttgttatgtttgttctgtagCATATTCAGCATTCCCTACGGTGATGGATATTAATCAAATACGGGAAATTTTACCGCACAG
species | Vitis vinifera |
transcript | Vv00s0357g00020.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGCTTGCGCTTCTCTCGACGCTGGTAAAGGAGACGTTCCCGTCGAAAAGA CATATTCAGCATTCCCTACGGTGATGGATATTAATCAAATACGGGAAATTTEST: gi|30256504|gb|CB972347.1|CB972347
genomic: CGCTTGCGCTTCTCTCGACGCTGGTAAAGGAGACGTTCCCGTCGAAAAGAgtatgctctt ... tgttctgtagCATATTCAGCATTCCCTACGGTGATGGATATTAATCAAATACGGGAAATTT
EST: CGCTTGCGCTTCTCTCGACGCTGGTAAAGGAGACGTGATCGTCGAAAAGA CATATTCAGCATTCCCTACGGTGATGGATATTAATCAAATACGGGAAATTTEST: gi|110387242|gb|EC951896.1|EC951896
genomic: CGCTTGCGCTTCTCTCGACGCTGGTAAAGGAGACGTTCCCGTCGAAAAGAgtatgctctt ... tgttctgtagCATATTCAGCATTCCCTACGGTGATGGATATTAATCAAATACGGGAAATTT
EST: CGCTTGCGCTTCTCTCGACGCTGGTAAAGGAGACGTTCCCGTCGAAAAGA CATATTCAGCATTCCCTACGGTGATGGATATTAATCAAATACGGGAAATTTEST: gi|26267567|gb|CA818630.1|CA818630
genomic: CGCTTGCGCTTCTCTCGACGCTGGTAAAGGAGACGTTCCCGTCGAAAAGAgtatgctctt ... tgttctgtagCATATTCAGCATTCCCTACGGTGATGGATATTAATCAAATACGGGAAATTT
EST: CGCTTGCGCTTCTCTCGACGCTGGTAAAGGAGACGTTCCCGTCGAAAAGA CATATTCAGCATTCCCTACGGTGATGGATATTAATCAAATACGGGAAATTTEST: gi|22011635|gb|BQ796669.1|BQ796669
genomic: CGCTTGCGCTTCTCTCGACGCTGGTAAAGGAGACGTTCCCGTCGAAAAGAgtatgctctt ... tgttctgtagCATATTCAGCATTCCCTACGGTGATGGATATTAATCAAATACGGGAAATTT
EST: GCTTGCGCTTCTCTCGACGCTGGTAAAGGAGACGTTGCCCGTCGAAAAGA CATATTCAGCATTCCCTACGGTGATGGATATTAATCAAATACGGGAAATTTEST: gi|30256224|gb|CB972067.1|CB972067
genomic: GCTTGCGCTTCTCTCGACGCTGGTAAAGGAGACGTT-CCCGTCGAAAAGAgtatgctctt ... tgttctgtagCATATTCAGCATTCCCTACGGTGATGGATATTAATCAAATACGGGAAATTT
EST: CGCTTGCGCTTCTCTCGACGCTGGTAAAGGAGACGTTNTCGTCGAAAAGA CATATTCAGCATTCCCTACGGTGATGGATATTAATCAAATACGGGAAATTTEST: gi|34547229|gb|CF515461.1|CF515461
genomic: CGCTTGCGCTTCTCTCGACGCTGGTAAAGGAGACGTTCCCGTCGAAAAGAgtatgctctt ... tgttctgtagCATATTCAGCATTCCCTACGGTGATGGATATTAATCAAATACGGGAAATTT
EST: CGCTTGCGCTTCTCTCGACGCTGGTAAAGGAGACGTTCCCGTCGAAAAGA CATATTCAGCATTCCCTACGGTGATGGATATTAATCAAATACGGGAAATTT
genomic: CGCTTGCGCTTCTCTCGACGCTGGTAAAGGAGACGTTCCCGTCGAAAAGAgtatgctctt ... tgttctgtagCATATTCAGCATTCCCTACGGTGATGGATATTAATCAAATACGGGAAATTT
tctgttaggttttgtgttcaaattttttctgttttttgttatgtttgttctgtagCATATTCAGCATTCCCTACGGTGATGGATATTAATCAAATACGGGAAATTTTACCGCACAG
tttgttct CT-rich tract
aaattttttctgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgctcttcttccggcatttctgcattgattcttttgtttttctattctgttaggttttgtgttcaaattttttctgttttttgttatgtttgttctgtagCATATTCAGCATTCCCTACGGTGATGGATATTAATCAAATACGGGAAATTTTACCGCACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA