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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggctttttcttctagggattttttctctcaattcatgaactgattgcaaatttggaaataatattgggaaaactgaacaattgggttttgggtgtttgcagGCTGATGTGTGCCATGCTTATCAGTTGCTGAAAAGAGGAGGGCTGAAGGATGAGAACATAGTGGTGTTTATGTACGATGATATTGCCACTCATGATTTCA

Basic information

species Vitis vinifera
transcript Vv00s0323g00100.t01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0323g00100.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: LOC_Os04g45470.1 (Oryza sativa), 3'ss of exon 1
gtgggctttttcttctagggatttt-ttctctcaattcatgaactgattgcaaatttggaaataatattgggaaaactgaacaattgggttttg-ggtgt-ttgcagGCTGATGTGTGCCATGCTTATCAGTTGCTGAAAAGAGGAGGGCTGAAGGATGAGAACATAGTGGTGTTTATGTACGATGATATTGCCACTCATGATTTCA
      ||  | |   |  |||    | |   || ||| | |  | | || | | ||  |   | |  | |   || || ||  | | ||||   ||||  |||||||| |||||||||||||| || ||| | ||| | |  |||||  ||||||| |||||||| |||||||||||||| ||||| ||||||  | |   | |||
-----tttagtgtgtgattgatcaaatacgaacagttcttaagataactgaacaattatatg-agtgcttgtttaa-tggacgttggtgtttcctggtgcattgcagGCCGATGTGTGCCATGCGTACCAGATTCTGCAGAAGGGAGGAGTGAAGGAGGAGAACATTGTGGTGTTTATGTATGATGACATTGCCCATAACATTCTCA

upper sequence: Vv00s0323g00100.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GRMZM2G062554_T01 (Zea mays), 3'ss of exon 1
gtgggctttttcttctagggattttttctctcaattcatgaactgattgcaaatttggaaataatattgggaaaactgaacaattgggttttgggtgtttgcagGCTGATGTGTGCCATGCTTATCAGTTGCTGAAAAGAGGAGGGCTGAAGGATGAGAACATAGTGGTGTTTATGTACGATGATATTGCCACTCATGATTTCA
|      | |  ||||      | | |    |||||  ||   ||  || ||   |    |  |  |    |   |  ||  ||     ||   |  || |||||| |||||||||||||| || ||| | ||| | |  |||||  ||||| | |||||||| |||||||| ||||| ||||||||||||    |   | | |
gcacaactatatttctttattatgtgtgctacaatttttg--ttgtatgaaatcattatgactacttacttagggcataatgat-acacttcatgc-ttcgcagGCCGATGTGTGCCATGCGTACCAGATACTGCAGAAGGGAGGAGTGAAGAAGGAGAACATTGTGGTGTTCATGTATGATGATATTGCCCACAACATTCTGA

upper sequence: Vv00s0323g00100.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GRMZM2G463291_T01 (Zea mays), 3'ss of exon 1
--gtgggctttttcttc-tagggattttttctctcaattcatgaactgattgcaaatttggaaataatattgggaaaactgaacaattgggttttgggtgtttgcagGCTGATGTGTGCCATGCTTATCAGTTGCTGAAAAGAGGAGGGCTGAAGGATGAGAACATAGTGGTGTTTATGTACGATGATATTGCCACTCATGATTTCA
       ||    ||   ||||||    |  ||  |  |||  ||   |||     |||  |       |||   | |  |  ||  ||  |||| |    |||||||||||| | || ||||| || ||| | ||| ||| ||||||  | || || |||||||| |||||||||||||| ||||| ||||||| |  ||   |||
tcccaaactagccctaagtagggaacagtcatcgtagatcagcaagcaattat---tttccatggtgctttgctcacagggttcatgtgactttttg----ttgcagGCTGATATATGTCATGCGTACCAGATACTGCAAAAAGGAGGCATAAAAGAGGAGAACATCGTGGTGTTTATGTATGATGACATTGCCAATAGTGCACTCA

upper sequence: Vv00s0323g00100.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA05G04230.1 (Glycine max), 3'ss of exon 1
gtgggctttttcttctagggattttttctctcaat-tcatgaactgattgcaaatttggaaataatattgggaaaactga--acaattgggttttgggtgtttgcagGCTGATGTGTGCCATGCTTATCAGTTGCTGAAAAGAGGAGGGCTGAAGGATGAGAACATAGTGGTGTTTATGTACGATGATATTGCCACTCATGATTTCA
        |||||   |   |||  ||   |  || |  |||   |  |     |||     |   |||     |  ||   |  | | |  ||    |   | ||||| |||||||||||||| || |||||||||| || ||| ||||| || || ||||||||||||||||||||||||||||| || || ||  | || || |
-------atttctaaaattaattaattagttatatgttttgagtgggctttgtttttaatggtttgatttatggatgtggtgatgaattgaattaaaataaattcagGCAGATGTGTGCCATGCGTACCAGTTGCTGATAAAAGGTGGGCTAAAAGAAGAGAACATAGTGGTGTTTATGTACGATGACATAGCTACAGACGAGTTAA

upper sequence: Vv00s0323g00100.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA17G14680.1 (Glycine max), 3'ss of exon 1
---------------------gtgggctttttcttctagggattttttctctcaattcatgaactgattgcaaatttggaaataatattgggaaaactgaacaattgggttttgggtgtttgcagGCTGATGTGTGCCATGCTTATCAGTTGCTGAAAAGAGGAGGGCTGAAGGATGAGAACATAGTGGTGTTTATGTACGATGATATTGCCACTCATGATTTCA
                     ||     |||  ||      |||  ||   |   || |||   ||| |     | ||    | || |  |||       |  | | |  ||    |     ||||| |||||||||||||| || |||||||||| || ||| || || || || ||||||||||||||||||||||||||||| || || ||  | || || |
gtaagttaatttggtttcggtgtttttatttattttctaaaattaattaattagttttatgttttgagttgctctgtgtttttgatttatggatgttgtgatgaattgaattaaattaaaaacagGCAGATGTGTGCCATGCGTACCAGTTGCTGATAAAAGGTGGACTAAAAGAAGAGAACATAGTGGTGTTTATGTACGATGACATAGCTACCAACGAGTTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caaatttggaaataatattgggaaaactgaacaattgggttttgggtgtttgcagGCTGATGTGTGCCATGCTTATCAGTTGCTGAAAAGAGGAGGGCTGAAGGATGAGAACATAGTGGTGTTTATGTACGATGATATTGCCACTCATGATTTCA
     ttggaaataatatt  TA-rich tract