Sequence
atgc intronic sequence ATGC exonic sequence...aagtgagatgcttgcataggcctttgttttatccctttcattagtacacttttcccctttaatgaacttactgactgtaaatcttgatgtcattttgcagTCATTCCATTATTGCAAGTATAGACGGGATGAAAATCAACTGTATATATTTGCTGATGATAGTGTTCCAAGATGGTTGACAGCATCTTACCACATAGATT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0317g00100.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: LOC_Os02g04480.1 (Oryza sativa), 3'ss of exon 1
aagtgagatgcttgcatag-gcctttgttttatcc-ctttcattagtacacttttcccctttaatgaacttactgactgtaaatcttgatgtcattt--tgcagTCATTCCATTATTGCAAGTATAGACGGGATGAAAATCAACTGTATATATTTGCTGATGATAGTGTTCCAAGATGGTTGACAGCATCTTACCACATAGATT
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--tttaaata-tagtatagtatacatataatattcaccatatttcatataccttttttgtttgacaaattt-ctaacatttctttgtggtgccatctcctgcagTCATTTCATTATTGCAAGTACAGAAGGGATGAAAACCAACTGTACATCTTCGCTGATGATAGTGTTCCCAGGTGGCTCACAGCAGCAAATCACATAGATT
upper sequence: Vv00s0317g00100.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GRMZM2G096972_T01 (Zea mays), 3'ss of exon 1
aagtgagatgcttgcataggcctttgttttatccctttcattagtaca-cttttcccctttaatgaacttactgactgtaaatcttgatgtcattttgcagTCATTCCATTATTGCAAGTATAGACGGGATGAAAATCAACTGTATATATTTGCTGATGATAGTGTTCCAAGATGGTTGACAGCATCTTACCACATAGATT
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-tgttgtacaattacctctattgttgattgactgagatccttaccttggcttccttcctttatttctgatactttctgtttggtgccattttcttttgcagTCATTTCACTATTGCAAGTACAGACGAGATGAAAACCAACTCTATATATTTGCTGATGACAGTGTTCCCAGGTGGCTTACAACAGCACAACACATAGATT
upper sequence: Vv00s0317g00100.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA20G38460.1 (Glycine max), 3'ss of exon 1
aagtgagatgctt-gcataggcctttgttttatccctttcattagtacactt----ttcccctttaatgaacttactgactg--taaatcttgatgtcattttgcagTCATTCCATTATTGCAAGTATAGACGGGATGAAAATCAACTGTATATATTTGCTGATGATAGTGTTCCAAGATGGTTGACAGCATCTTACCACATAGATT
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-------atattcagcatactattttctctgattcaatgtgctgctgctctacatgtgttctttgaataaaatcttcagctaactgtgttctttcccttctctccagTCCTTCCATTATTGCAAGTATAGGCGTGATGAAAACCAACTTTACATATTTGCTGATGATTGTGTTCCAAGGTGGCTTACTGCATCATACCACATAGATT
upper sequence: Vv00s0317g00100.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA10G43750.1 (Glycine max), 3'ss of exon 1
aagtgagatgcttgcataggcctttgttttatccctttcattagtacacttttccccttt-aatgaa--cttactgactgtaaatcttgatgtcattttgcagTCATTCCATTATTGCAAGTATAGACGGGATGAAAATCAACTGTATATATTTGCTGATGATAGTGTTCCAAGATGGTTGACAGCATCTTACCACATAGATT
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aaatagacagcttgcttttttctccgattcaatt-tgccgctgctctacatgtgttctttgaataaatctttgctaattgtgttctttcccttc--tctccagTCTTTCCATTATTGCAAGTATAGGCGTGATGAAAACCAACTTTACATATTTGCTGATGATTGCGTTCCAAGGTGGCTTACTGCATCATACCACATAGATT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.acacttttcccctttaatgaacttactgactgtaaatcttgatgtcattttgcagTCATTCCATTATTGCAAGTATAGACGGGATGAAAATCAACTGTATATATTTGCTGATGATAGTGTTCCAAGATGGTTGACAGCATCTTACCACATAGATT
tcatttt CT-rich tract
tttaatgaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aagtgagatgcttgcataggcctttgttttatccctttcattagtacacttttcccctttaatgaacttactgactgtaaatcttgatgtcattttgcagTCATTCCATTATTGCAAGTATAGACGGGATGAAAATCAACTGTATATATTTGCTGATGATAGTGTTCCAAGATGGTTGACAGCATCTTACCACATAGATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - -gcttgca
- - - - - - - - - -gcctttg
- - - - - - - - - - - - - - - - ccctttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatgaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgactgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttgatg