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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtatcttaattgatctcttccatgcatactttgtatatatcatagatggggtaatgatcatatgttgaatcagCTGGAGCATGTGGCTTTGGCGAATATGGAAGAAGTGTCAACGGCGGCAACGTTGGCGCAGTTTCTAGGCTATACAGGGATGGGACTGGCTGCGGTGCATG

Basic information

species Vitis vinifera
transcript Vv00s0309g00050.t01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0309g00050.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA05G05430.1 (Glycine max), 3'ss of exon 2
-----------------gtacgtatcttaattgatctcttccatg-catactttgtata-tatcatagatggggtaatg---atca--tatgttgaatcagCTGGAGCATGTGGCTTTGGCGAATATGGAAGAAGTGTCAACGGCGGCAACGTTGGCGCAGTTTCTAGGCTATACAGGGATGGGACTGGCTGCGGTGCATG
                   |   | | | ||| || |   ||||| || |     || | ||| || | | |   |||    || |  ||   ||  ||||  ||||| ||||||||||||||||||||||||| ||| || |  || |  || |  | ||| ||||||||||  ||| |||| | |||||| ||||||||
cttctaaggtagttgtaaaaaaaaacattatt-atttacaccatgacacaacaaataaaatatgatcgttcgttcaattcatattaattactatgtttcagGGGGAGCTTGTGGCTTTGGCGAATATGGAAGAACTGTGAATGATGGAAGTGTGGCAGGAGTGTCTAGGCTATGGAGGAATGGAAGTGGCTGTGGTGCATG

upper sequence: Vv00s0309g00050.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA17G15710.2 (Glycine max), 3'ss of exon 1
------------gtacgtatcttaattgatctcttccatgcatactttgtata--------tatcat-----agatggggtaatgatcatatgttgaatcagCTGGAGCATGTGGCTTTGGCGAATATGGAAGAAGTGTCAACGGCGGCAACGTTGGCGCAGTTTCTAGGCTATACAGGGATGGGACTGGCTGCGGTGCATG
              |||||| | ||  ||   |||| |||     | | || |        ||| ||       |||    ||  |  | |   |   ||||  ||||| ||||||||||||||||||||||| | ||| || |  || |  || |  | ||| ||||||||||  ||| |||| | ||| || ||||||||
ttagttttgcagacacgtatttcaa--gaatacttctatggtatttgtataaaaaaatcattattatttgcagcatgacacaacaaataaaatatttttcagGGGGAGCTTGTGGCTTTGGCGAATATGGAAGGACTGTGAATGATGGAAGTGTGGCAGGAGTGTCTAGGCTATGGAGGAATGGAAGTGGTTGTGGTGCATG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tccatgcatactttgtatatatcatagatggggtaatgatcatatgttgaatcagCTGGAGCATGTGGCTTTGGCGAATATGGAAGAAGTGTCAACGGCGGCAACGTTGGCGCAGTTTCTAGGCTATACAGGGATGGGACTGGCTGCGGTGCATG
       atactttgtatatat  TA-rich tract