1 5' 3' |
...actcaaatctccatacttcggagacatgtggtattctgatcaatcatggaggcctctttttctttagttttataattttagacataacgaatggttgcagGACAGACAGAGAAACAGCAATGGAGACTGAAGAGATGACAAACAAGGATATGAAGGTGGAAATTTCAGCTGTAGCAGAAGGGTTAGGTGTGCCAGTGCTC
species | Vitis vinifera |
transcript | Vv00s0291g00020.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGTCATTCCAGAGCCTCTCGGAG GACAGACAGAGAAACAGCAATGGAGACTGAAGAGATGACAAACAAGGATATEST: gi|110373493|gb|EC937735.1|EC937735
genomic: GGTCATTCCAGAGCCTCTCGGAGgtaccaagat ... atggttgcagGACAGACAGAGAAACAGCAATGGAGACTGAAGAGATGACAAACAAGGATAT
EST: TCTGGGCAAGTTCTTTGTGGAGTTGCAGGTCATTCCAGAGCCTCTCGGAG GACAGACAGAGAAACAGCAATGGAGACTGAAGAGATGACAAACAAGGATATEST: gi|110386908|gb|EC951542.1|EC951542
genomic: TCTGGGCAAGTTCTTTGTGGAGTTGCAGGTCATTCCAGAGCCTCTCGGAGgtaccaagat ... atggttgcagGACAGACAGAGAAACAGCAATGGAGACTGAAGAGATGACAAACAAGGATAT
EST: TCTGGGCAAGTTCTTTGTGGAGTTGCAGGTCATTCCAGAGCCTCTCGGAG GACAGACAGAGAAACAGCAATGGAGACTGAAGAGATGACAAACAAGGATAT
genomic: TCTGGGCAAGTTCTTTGTGGAGTTGCAGGTCATTCCAGAGCCTCTCGGAGgtaccaagat ... atggttgcagGACAGACAGAGAAACAGCAATGGAGACTGAAGAGATGACAAACAAGGATAT
atggaggcctctttttctttagttttataattttagacataacgaatggttgcagGACAGACAGAGAAACAGCAATGGAGACTGAAGAGATGACAAACAAGGATATGAAGGTGGAAATTTCAGCTGTAGCAGAAGGGTTAGGTGTGCCAGTGCTC
acataac putative branch site (score: 3)
tttttctttagtttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actcaaatctccatacttcggagacatgtggtattctgatcaatcatggaggcctctttttctttagttttataattttagacataacgaatggttgcagGACAGACAGAGAAACAGCAATGGAGACTGAAGAGATGACAAACAAGGATATGAAGGTGGAAATTTCAGCTGTAGCAGAAGGGTTAGGTGTGCCAGTGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - atctcca
- - - - - - - - - - - - catgtgg
- - - - - - - - - - - - - - - - - - - - - - catggag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acataac