Sequence
atgc intronic sequence ATGC exonic sequence...tataaatcaccagttcccccaaaaggaagaacaccttaattccaggaaccatatattttcttagaactgtcaataattgaattggcctttgtgtttgcagTGGGTACCATGTTGGGAGCCATGACTGGAGCTTTGATAGGCCAAGAGACAGAGAGCGGGTTTGTTAGAGGGGCTGCTGTTGGAGCAATATCAGGAGCTGT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0264g00020.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA11G08540.1 (Glycine max), 3'ss of exon 1
--tataaatcaccagttcccccaaaaggaagaacaccttaattccaggaaccatatattttcttagaactgtcaataattgaattggcctttgtgtt-tgcagTGGGTACCATGTTGGGAGCCATGACTGGAGCTTTGATAGGCCAAGAGACAGAGAGCGGGTTTGTTAGAGGGGCTGCTGTTGGAGCAATATCAGGAGCTGT
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tccaaagtttggttaatgtttttcttatatccctaccctagtgtttt-aaccattaaggtg--tggtgtgtgctttgtttaaggttgtttttgtcttctgcagTTGGCACTTTGTTGGGGGCTTTGACTGGAGCTTTGATAGGACAAGAAACTGAGAGTGGCTTCATTCGAGGGGCTGCTGTTGGTGCCATATCAGGAGCTGT
upper sequence: Vv00s0264g00020.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA16G23050.2 (Glycine max), 3'ss of exon 3
tataaatcaccagttcccccaaaaggaagaacaccttaattccaggaaccatatattttcttagaactgtcaa---taattgaattggcctttgtgtttgcagTGGGTACCATGTTGGGAGCCATGACTGGAGCTTTGATAGGCCAAGAGACAGAGAGCGGGTTTGTTAGAGGGGCTGCTGTTGGAGCAATATCAGGAGCTGT
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--tcaatggtt-gtttttcttttataatttttgttttgaaattccaaattgtgacaatatttgagactaataaggtttaatgggttgtttgttatatttgcagTTGGCACTTTGTTGGGTGCTATGACTGGTGCCTTGATAGGCCAAGAGACAGAGAGTGGTTTCATTCGAGGGGCTGCTATAGGTGCCATATCAGGAGCTGT
upper sequence: Vv00s0264g00020.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA02G05000.1 (Glycine max), 3'ss of exon 1
tataaatcaccagttcccccaaaaggaagaacaccttaattccaggaaccatatattttcttagaactgtcaa---taattgaattggcctttgtgtttgcagTGGGTACCATGTTGGGAGCCATGACTGGAGCTTTGATAGGCCAAGAGACAGAGAGCGGGTTTGTTAGAGGGGCTGCTGTTGGAGCAATATCAGGAGCTGT
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caaaggtttttt-ttctttttataatttttgttttgaaattcca--aactgtgacaatatttgaggctaataaggtttaatggattgtttgttatatttgcagTTGGCACTTTGTTGGGGGCTATGACTGGAGCCTTGATAGGCCAAGAGACAGAGAGTGGTTTCATTCGAGGGGCCGCTATAGGTGCCATATCAGGAGCTGT
upper sequence: Vv00s0264g00020.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA01G36760.1 (Glycine max), 3'ss of exon 2
tataaatcaccagttcccccaaaaggaagaacaccttaattccaggaaccatatattttcttagaactgtcaataattgaat-tggcctttgtgt-ttgcagTGGGTACCATGTTGGGAGCCATGACTGGAGCTTTGATAGGCCAAGAGACAGAGAGCGGGTTTGTTAGAGGGGCTGCTGTTGGAGCAATATCAGGAGCTGT
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aatgcttttcttctattacctagtgttttaa-acattaaagtgtggtgt-gtgctttttttaaggacaatgagttctaatgtgttgtttttgtctgctgcagTTGGCACTTTGTTGGGGGCTTTGACTGGAGCTTTGATAGGACAAGAAACTGAGAGTGGCTTCATTCGAGGGGCTGCTGTTGGTGCCATATCAGGAGCCGT
upper sequence: Vv00s0264g00020.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT4G35840.1 (Arabidopsis thaliana), 3'ss of exon 1
-------------------------------------------------------------------------------------tataaatcaccagttcccccaaaaggaagaacaccttaattccaggaaccatatatttt----cttagaactgtca---ataattgaattggcc-tttgtgtttgcagTGGGTACCATGTTGGGAGCCATGACTGGAGCTTTGATAGGCCAAGAGACAGAGAGCGGGTTTGTTAGAGGGGCTGCTGTTGGAGCAATATCAGGAGCTGT
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gtcggtctcttgtttcctattacaatttcttgattcttttcaagaatgtctctccacttcttggaaacttttatgaagctttttgtcctgctttggattgatttgatcattgatatcactttactgttgagtagggtagaatctgcaactttgggtttttatgtagagctaagaaagttgtttccttcttcagTGGGCACATTGCTTGGAGCACTTACTGGAGCTTTGATAGGCCAAGAAACCGAAAGTGGGTTTATCCGAGGAGCGGCGGTTGGAGCCATTTCGGGAGCTGTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110383407|gb|EC947779.1|EC947779EST: GATTCTTGGAAACGTTTTCTCTGCGATCTTCACTTTCTTCTTCGCATTGG TGGGTACCATGTTGGGAGCCATGACTGGAGCTTTGATAGGCCAAGAGACAG
genomic: GATTCTTGGAAACGTTTTCTCTGCGATCTTCACTTTCTTCTTCGCATTGGgtttgtctct ... gtgtttgcagTGGGTACCATGTTGGGAGCCATGACTGGAGCTTTGATAGGCCAAGAGACAG
EST:
gi|110374711|gb|EC939634.1|EC939634EST: GATTCTTGGAAACGTTTTCTCTGCGATCTTCACTTTCTTCTTCGCATTGG TGGGTACCATGTTGGGAGCCATGACTGGAGCTTTGATAGGCCAAGAGACAG
genomic: GATTCTTGGAAACGTTTTCTCTGCGATCTTCACTTTCTTCTTCGCATTGGgtttgtctct ... gtgtttgcagTGGGTACCATGTTGGGAGCCATGACTGGAGCTTTGATAGGCCAAGAGACAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gaaccatatattttcttagaactgtcaataattgaattggcctttgtgtttgcagTGGGTACCATGTTGGGAGCCATGACTGGAGCTTTGATAGGCCAAGAGACAGAGAGCGGGTTTGTTAGAGGGGCTGCTGTTGGAGCAATATCAGGAGCTGT
cctttgt CT-rich tract
atatattttcttagaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tataaatcaccagttcccccaaaaggaagaacaccttaattccaggaaccatatattttcttagaactgtcaataattgaattggcctttgtgtttgcagTGGGTACCATGTTGGGAGCCATGACTGGAGCTTTGATAGGCCAAGAGACAGAGAGCGGGTTTGTTAGAGGGGCTGCTGTTGGAGCAATATCAGGAGCTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - -atcacca
- - - - - - -ttccccc
- - - - - - - - - - - - ggaagaa
- - - - - - - - - - - - - - - -cacctta
- - - - - - - - - - - - - - - - - - - - - - - aaccata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgtcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aattgaa